JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SLC13A5_chr17_6679719_6718369	0/0	c0010	1707	1	1	0	0	0	0	copy fasta	SLC13A5	chr17	6679719	6718369
SLC13A5_chr17_6679719_6718369	0/0	c0011	1707	1	0	0	0	0	1	copy fasta	SLC13A5	chr17	6679719	6718369
SLC14A1_chr18_45719181_45757520	0/1	c0001	1170	140	20	35	66	6	12	copy fasta	SLC14A1	chr18	45719181	45757520
SLC14A1_chr18_45719181_45757520	0/0	c0002	1170	112	24	11	70	0	7	copy fasta	SLC14A1	chr18	45719181	45757520
SLC14A1_chr18_45719181_45757520	1/0	c0003	1170	104	34	22	19	9	19	copy fasta	SLC14A1	chr18	45719181	45757520
SLC14A1_chr18_45719181_45757520	0/0	c0004	1170	28	0	0	27	0	1	copy fasta	SLC14A1	chr18	45719181	45757520
SLC14A1_chr18_45719181_45757520	0/0	c0005	1170	14	11	0	2	0	1	copy fasta	SLC14A1	chr18	45719181	45757520
SLC14A1_chr18_45719181_45757520	0/0	c0006	1170	7	0	6	0	1	0	copy fasta	SLC14A1	chr18	45719181	45757520
SLC14A1_chr18_45719181_45757520	0/0	c0007	1170	3	3	0	0	0	0	copy fasta	SLC14A1	chr18	45719181	45757520
SLC14A1_chr18_45719181_45757520	0/0	c0008	1170	2	0	0	2	0	0	copy fasta	SLC14A1	chr18	45719181	45757520
SLC14A1_chr18_45719181_45757520	0/0	c0009	1170	2	0	0	0	0	2	copy fasta	SLC14A1	chr18	45719181	45757520
SLC14A1_chr18_45719181_45757520	0/0	c0010	1170	1	0	0	1	0	0	copy fasta	SLC14A1	chr18	45719181	45757520
SLC14A1_chr18_45719181_45757520	0/0	c0011	1170	1	1	0	0	0	0	copy fasta	SLC14A1	chr18	45719181	45757520
SLC14A1_chr18_45719181_45757520	0/0	c0012	1170	1	0	0	0	0	1	copy fasta	SLC14A1	chr18	45719181	45757520
SLC14A1_chr18_45719181_45757520	0/0	c0013	1170	1	0	0	1	0	0	copy fasta	SLC14A1	chr18	45719181	45757520
SLC14A1_chr18_45719181_45757520	0/0	c0014	1170	1	0	0	0	0	1	copy fasta	SLC14A1	chr18	45719181	45757520
SLC14A1_chr18_45719181_45757520	0/0	c0015	1146	1	1	0	0	0	0	copy fasta	SLC14A1	chr18	45719181	45757520
SLC14A2_chr18_45610476_45688688	0/1	c0001	2763	82	18	16	39	2	6	copy fasta	SLC14A2	chr18	45610476	45688688
SLC14A2_chr18_45610476_45688688	0/0	c0002	2763	56	14	3	34	0	5	copy fasta	SLC14A2	chr18	45610476	45688688
SLC14A2_chr18_45610476_45688688	0/0	c0003	2763	52	1	9	33	1	8	copy fasta	SLC14A2	chr18	45610476	45688688
SLC14A2_chr18_45610476_45688688	0/0	c0004	2763	35	9	9	10	3	4	copy fasta	SLC14A2	chr18	45610476	45688688
SLC14A2_chr18_45610476_45688688	0/0	c0005	2763	31	10	5	14	1	1	copy fasta	SLC14A2	chr18	45610476	45688688
SLC14A2_chr18_45610476_45688688	0/0	c0006	2763	23	7	8	3	3	2	copy fasta	SLC14A2	chr18	45610476	45688688
SLC14A2_chr18_45610476_45688688	0/0	c0007	2763	20	3	8	2	3	4	copy fasta	SLC14A2	chr18	45610476	45688688
SLC14A2_chr18_45610476_45688688	0/0	c0008	2763	16	1	1	12	0	2	copy fasta	SLC14A2	chr18	45610476	45688688
SLC14A2_chr18_45610476_45688688	0/0	c0009	2763	13	0	2	10	0	1	copy fasta	SLC14A2	chr18	45610476	45688688
SLC14A2_chr18_45610476_45688688	0/0	c0010	2763	11	5	3	2	0	1	copy fasta	SLC14A2	chr18	45610476	45688688
SLC14A2_chr18_45610476_45688688	1/0	c0011	2763	8	4	0	3	0	0	copy fasta	SLC14A2	chr18	45610476	45688688
SLC14A2_chr18_45610476_45688688	0/0	c0012	2763	6	0	2	4	0	0	copy fasta	SLC14A2	chr18	45610476	45688688
SLC14A2_chr18_45610476_45688688	0/0	c0013	2763	5	4	0	1	0	0	copy fasta	SLC14A2	chr18	45610476	45688688
SLC14A2_chr18_45610476_45688688	0/0	c0014	2763	5	1	0	4	0	0	copy fasta	SLC14A2	chr18	45610476	45688688
SLC14A2_chr18_45610476_45688688	0/0	c0015	2763	5	2	0	2	1	0	copy fasta	SLC14A2	chr18	45610476	45688688
SLC14A2_chr18_45610476_45688688	0/0	c0016	2763	4	0	0	3	0	1	copy fasta	SLC14A2	chr18	45610476	45688688
SLC14A2_chr18_45610476_45688688	0/0	c0017	2763	3	3	0	0	0	0	copy fasta	SLC14A2	chr18	45610476	45688688
SLC14A2_chr18_45610476_45688688	0/0	c0018	2763	3	0	2	0	1	0	copy fasta	SLC14A2	chr18	45610476	45688688
SLC14A2_chr18_45610476_45688688	0/0	c0019	2763	3	0	0	3	0	0	copy fasta	SLC14A2	chr18	45610476	45688688
SLC14A2_chr18_45610476_45688688	0/0	c0020	2763	3	1	1	1	0	0	copy fasta	SLC14A2	chr18	45610476	45688688
SLC14A2_chr18_45610476_45688688	0/0	c0021	2763	2	0	0	0	0	2	copy fasta	SLC14A2	chr18	45610476	45688688
SLC14A2_chr18_45610476_45688688	0/0	c0022	2763	2	1	1	0	0	0	copy fasta	SLC14A2	chr18	45610476	45688688
SLC14A2_chr18_45610476_45688688	0/0	c0023	2763	1	1	0	0	0	0	copy fasta	SLC14A2	chr18	45610476	45688688
SLC14A2_chr18_45610476_45688688	0/0	c0024	2763	1	0	0	1	0	0	copy fasta	SLC14A2	chr18	45610476	45688688
SLC14A2_chr18_45610476_45688688	0/0	c0025	2763	1	1	0	0	0	0	copy fasta	SLC14A2	chr18	45610476	45688688
SLC14A2_chr18_45610476_45688688	0/0	c0026	2763	1	1	0	0	0	0	copy fasta	SLC14A2	chr18	45610476	45688688
SLC14A2_chr18_45610476_45688688	0/0	c0027	2763	1	1	0	0	0	0	copy fasta	SLC14A2	chr18	45610476	45688688
SLC14A2_chr18_45610476_45688688	0/0	c0028	2763	1	1	0	0	0	0	copy fasta	SLC14A2	chr18	45610476	45688688
SLC14A2_chr18_45610476_45688688	0/0	c0029	2763	1	0	0	0	0	1	copy fasta	SLC14A2	chr18	45610476	45688688
SLC14A2_chr18_45610476_45688688	0/0	c0030	2763	1	0	0	0	1	0	copy fasta	SLC14A2	chr18	45610476	45688688
SLC14A2_chr18_45610476_45688688	0/0	c0031	2763	1	1	0	0	0	0	copy fasta	SLC14A2	chr18	45610476	45688688
SLC14A2_chr18_45610476_45688688	0/0	c0032	2763	1	0	0	1	0	0	copy fasta	SLC14A2	chr18	45610476	45688688
SLC14A2_chr18_45610476_45688688	0/0	c0033	2763	1	1	0	0	0	0	copy fasta	SLC14A2	chr18	45610476	45688688