JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SLC14A2_chr18_45610476_45688688	0/0	c0034	2763	1	1	0	0	0	0	copy fasta	SLC14A2	chr18	45610476	45688688
SLC14A2_chr18_45610476_45688688	0/0	c0035	2763	1	0	1	0	0	0	copy fasta	SLC14A2	chr18	45610476	45688688
SLC14A2_chr18_45610476_45688688	0/0	c0036	2763	1	0	1	0	0	0	copy fasta	SLC14A2	chr18	45610476	45688688
SLC15A1_chr13_98678801_98757672	1/0	c0001	2127	109	6	16	73	3	10	copy fasta	SLC15A1	chr13	98678801	98757672
SLC15A1_chr13_98678801_98757672	0/0	c0002	2127	97	30	37	10	6	14	copy fasta	SLC15A1	chr13	98678801	98757672
SLC15A1_chr13_98678801_98757672	0/0	c0003	2127	59	2	7	42	3	5	copy fasta	SLC15A1	chr13	98678801	98757672
SLC15A1_chr13_98678801_98757672	0/0	c0004	2127	38	15	3	17	1	2	copy fasta	SLC15A1	chr13	98678801	98757672
SLC15A1_chr13_98678801_98757672	0/0	c0005	2127	16	0	0	16	0	0	copy fasta	SLC15A1	chr13	98678801	98757672
SLC15A1_chr13_98678801_98757672	0/0	c0006	2127	13	7	1	3	0	2	copy fasta	SLC15A1	chr13	98678801	98757672
SLC15A1_chr13_98678801_98757672	0/0	c0007	2127	12	11	1	0	0	0	copy fasta	SLC15A1	chr13	98678801	98757672
SLC15A1_chr13_98678801_98757672	0/1	c0008	2127	10	9	0	0	0	0	copy fasta	SLC15A1	chr13	98678801	98757672
SLC15A1_chr13_98678801_98757672	0/0	c0009	2127	9	3	2	4	0	0	copy fasta	SLC15A1	chr13	98678801	98757672
SLC15A1_chr13_98678801_98757672	0/0	c0010	2127	6	0	0	6	0	0	copy fasta	SLC15A1	chr13	98678801	98757672
SLC15A1_chr13_98678801_98757672	0/0	c0011	2127	6	0	0	5	0	1	copy fasta	SLC15A1	chr13	98678801	98757672
SLC15A1_chr13_98678801_98757672	0/0	c0012	2127	4	4	0	0	0	0	copy fasta	SLC15A1	chr13	98678801	98757672
SLC15A1_chr13_98678801_98757672	0/0	c0013	2127	3	0	2	0	0	1	copy fasta	SLC15A1	chr13	98678801	98757672
SLC15A1_chr13_98678801_98757672	0/0	c0014	2127	3	0	0	0	0	3	copy fasta	SLC15A1	chr13	98678801	98757672
SLC15A1_chr13_98678801_98757672	0/0	c0015	2127	2	0	0	0	0	2	copy fasta	SLC15A1	chr13	98678801	98757672
SLC15A1_chr13_98678801_98757672	0/0	c0016	2127	2	0	0	0	0	2	copy fasta	SLC15A1	chr13	98678801	98757672
SLC15A1_chr13_98678801_98757672	0/0	c0017	2127	2	2	0	0	0	0	copy fasta	SLC15A1	chr13	98678801	98757672
SLC15A1_chr13_98678801_98757672	0/0	c0018	2127	1	1	0	0	0	0	copy fasta	SLC15A1	chr13	98678801	98757672
SLC15A1_chr13_98678801_98757672	0/0	c0019	2127	1	0	0	1	0	0	copy fasta	SLC15A1	chr13	98678801	98757672
SLC15A1_chr13_98678801_98757672	0/0	c0020	2127	1	1	0	0	0	0	copy fasta	SLC15A1	chr13	98678801	98757672
SLC15A1_chr13_98678801_98757672	0/0	c0021	2127	1	0	0	1	0	0	copy fasta	SLC15A1	chr13	98678801	98757672
SLC15A1_chr13_98678801_98757672	0/0	c0022	2127	1	1	0	0	0	0	copy fasta	SLC15A1	chr13	98678801	98757672
SLC15A1_chr13_98678801_98757672	0/0	c0023	2127	1	0	1	0	0	0	copy fasta	SLC15A1	chr13	98678801	98757672
SLC15A1_chr13_98678801_98757672	0/0	c0024	2127	1	0	0	1	0	0	copy fasta	SLC15A1	chr13	98678801	98757672
SLC15A1_chr13_98678801_98757672	0/0	c0025	2127	1	1	0	0	0	0	copy fasta	SLC15A1	chr13	98678801	98757672
SLC15A1_chr13_98678801_98757672	0/0	c0026	2127	1	0	0	1	0	0	copy fasta	SLC15A1	chr13	98678801	98757672
SLC15A1_chr13_98678801_98757672	0/0	c0027	2127	1	0	0	1	0	0	copy fasta	SLC15A1	chr13	98678801	98757672
SLC15A1_chr13_98678801_98757672	0/0	c0028	2127	1	0	1	0	0	0	copy fasta	SLC15A1	chr13	98678801	98757672
SLC15A1_chr13_98678801_98757672	0/0	c0029	2127	1	1	0	0	0	0	copy fasta	SLC15A1	chr13	98678801	98757672
SLC15A1_chr13_98678801_98757672	0/0	c0030	2127	1	0	0	1	0	0	copy fasta	SLC15A1	chr13	98678801	98757672
SLC15A1_chr13_98678801_98757672	0/0	c0031	2127	1	0	0	0	1	0	copy fasta	SLC15A1	chr13	98678801	98757672
SLC15A1_chr13_98678801_98757672	0/0	c0032	2127	1	0	0	1	0	0	copy fasta	SLC15A1	chr13	98678801	98757672
SLC15A1_chr13_98678801_98757672	0/0	c0033	2127	1	0	0	1	0	0	copy fasta	SLC15A1	chr13	98678801	98757672
SLC15A1_chr13_98678801_98757672	0/0	c0034	2127	1	0	1	0	0	0	copy fasta	SLC15A1	chr13	98678801	98757672
SLC15A2_chr3_121889401_121949188	1/0	c0001	2190	178	33	50	54	13	27	copy fasta	SLC15A2	chr3	121889401	121949188
SLC15A2_chr3_121889401_121949188	0/1	c0002	2190	142	41	29	59	3	9	copy fasta	SLC15A2	chr3	121889401	121949188
SLC15A2_chr3_121889401_121949188	0/0	c0003	2190	6	6	0	0	0	0	copy fasta	SLC15A2	chr3	121889401	121949188
SLC15A2_chr3_121889401_121949188	0/0	c0004	2190	3	0	0	3	0	0	copy fasta	SLC15A2	chr3	121889401	121949188
SLC15A2_chr3_121889401_121949188	0/0	c0005	2190	2	2	0	0	0	0	copy fasta	SLC15A2	chr3	121889401	121949188
SLC15A2_chr3_121889401_121949188	0/0	c0006	2190	2	2	0	0	0	0	copy fasta	SLC15A2	chr3	121889401	121949188
SLC15A2_chr3_121889401_121949188	0/0	c0007	2190	1	0	0	1	0	0	copy fasta	SLC15A2	chr3	121889401	121949188
SLC15A2_chr3_121889401_121949188	0/0	c0008	2190	1	0	0	1	0	0	copy fasta	SLC15A2	chr3	121889401	121949188
SLC15A2_chr3_121889401_121949188	0/0	c0009	2190	1	1	0	0	0	0	copy fasta	SLC15A2	chr3	121889401	121949188
SLC15A2_chr3_121889401_121949188	0/0	c0010	2190	1	0	1	0	0	0	copy fasta	SLC15A2	chr3	121889401	121949188
SLC15A2_chr3_121889401_121949188	0/0	c0011	2190	1	1	0	0	0	0	copy fasta	SLC15A2	chr3	121889401	121949188
SLC15A3_chr11_60932084_60957176	1/1	c0001	1746	303	46	61	146	15	33	copy fasta	SLC15A3	chr11	60932084	60957176
SLC15A3_chr11_60932084_60957176	0/0	c0002	1746	18	18	0	0	0	0	copy fasta	SLC15A3	chr11	60932084	60957176