JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SLC15A3_chr11_60932084_60957176	0/0	c0003	1746	14	11	1	0	0	2	copy fasta	SLC15A3	chr11	60932084	60957176
SLC15A3_chr11_60932084_60957176	0/0	c0004	1746	12	1	7	0	1	3	copy fasta	SLC15A3	chr11	60932084	60957176
SLC15A3_chr11_60932084_60957176	0/0	c0005	1746	4	4	0	0	0	0	copy fasta	SLC15A3	chr11	60932084	60957176
SLC15A3_chr11_60932084_60957176	0/0	c0006	1746	3	3	0	0	0	0	copy fasta	SLC15A3	chr11	60932084	60957176
SLC15A3_chr11_60932084_60957176	0/0	c0007	1746	3	3	0	0	0	0	copy fasta	SLC15A3	chr11	60932084	60957176
SLC15A3_chr11_60932084_60957176	0/0	c0008	1746	3	3	0	0	0	0	copy fasta	SLC15A3	chr11	60932084	60957176
SLC15A3_chr11_60932084_60957176	0/0	c0009	1746	3	2	1	0	0	0	copy fasta	SLC15A3	chr11	60932084	60957176
SLC15A3_chr11_60932084_60957176	0/0	c0010	1746	3	0	0	3	0	0	copy fasta	SLC15A3	chr11	60932084	60957176
SLC15A3_chr11_60932084_60957176	0/0	c0011	1746	2	0	0	2	0	0	copy fasta	SLC15A3	chr11	60932084	60957176
SLC15A3_chr11_60932084_60957176	0/0	c0012	1746	2	0	0	2	0	0	copy fasta	SLC15A3	chr11	60932084	60957176
SLC15A3_chr11_60932084_60957176	0/0	c0013	1746	2	0	0	0	0	2	copy fasta	SLC15A3	chr11	60932084	60957176
SLC15A3_chr11_60932084_60957176	0/0	c0014	1746	1	0	0	1	0	0	copy fasta	SLC15A3	chr11	60932084	60957176
SLC15A3_chr11_60932084_60957176	0/0	c0015	1746	1	0	0	0	0	1	copy fasta	SLC15A3	chr11	60932084	60957176
SLC15A3_chr11_60932084_60957176	0/0	c0016	1746	1	1	0	0	0	0	copy fasta	SLC15A3	chr11	60932084	60957176
SLC15A3_chr11_60932084_60957176	0/0	c0017	1746	1	1	0	0	0	0	copy fasta	SLC15A3	chr11	60932084	60957176
SLC15A3_chr11_60932084_60957176	0/0	c0018	1746	1	0	0	0	0	1	copy fasta	SLC15A3	chr11	60932084	60957176
SLC15A3_chr11_60932084_60957176	0/0	c0019	1746	1	1	0	0	0	0	copy fasta	SLC15A3	chr11	60932084	60957176
SLC15A3_chr11_60932084_60957176	0/0	c0020	1746	1	0	0	1	0	0	copy fasta	SLC15A3	chr11	60932084	60957176
SLC15A3_chr11_60932084_60957176	0/0	c0021	1746	1	1	0	0	0	0	copy fasta	SLC15A3	chr11	60932084	60957176
SLC15A3_chr11_60932084_60957176	0/0	c0022	1746	1	0	0	1	0	0	copy fasta	SLC15A3	chr11	60932084	60957176
SLC15A3_chr11_60932084_60957176	0/0	c0023	1746	1	1	0	0	0	0	copy fasta	SLC15A3	chr11	60932084	60957176
SLC15A4_chr12_128788194_128828958	0/0	c0001	1734	165	19	24	97	7	18	copy fasta	SLC15A4	chr12	128788194	128828958
SLC15A4_chr12_128788194_128828958	0/0	c0002	1734	101	29	18	40	4	10	copy fasta	SLC15A4	chr12	128788194	128828958
SLC15A4_chr12_128788194_128828958	0/0	c0003	1734	47	0	9	31	0	7	copy fasta	SLC15A4	chr12	128788194	128828958
SLC15A4_chr12_128788194_128828958	1/0	c0004	1734	42	20	14	0	5	2	copy fasta	SLC15A4	chr12	128788194	128828958
SLC15A4_chr12_128788194_128828958	0/0	c0005	1734	27	16	4	7	0	0	copy fasta	SLC15A4	chr12	128788194	128828958
SLC15A4_chr12_128788194_128828958	0/1	c0006	1734	12	0	3	0	0	8	copy fasta	SLC15A4	chr12	128788194	128828958
SLC15A4_chr12_128788194_128828958	0/0	c0007	1734	3	0	1	0	2	0	copy fasta	SLC15A4	chr12	128788194	128828958
SLC15A4_chr12_128788194_128828958	0/0	c0008	1734	3	3	0	0	0	0	copy fasta	SLC15A4	chr12	128788194	128828958
SLC15A4_chr12_128788194_128828958	0/0	c0009	1734	2	0	0	2	0	0	copy fasta	SLC15A4	chr12	128788194	128828958
SLC15A4_chr12_128788194_128828958	0/0	c0010	1734	1	0	0	0	0	1	copy fasta	SLC15A4	chr12	128788194	128828958
SLC15A4_chr12_128788194_128828958	0/0	c0011	1734	1	0	1	0	0	0	copy fasta	SLC15A4	chr12	128788194	128828958
SLC15A4_chr12_128788194_128828958	0/0	c0012	1734	1	0	0	0	0	1	copy fasta	SLC15A4	chr12	128788194	128828958
SLC15A4_chr12_128788194_128828958	0/0	c0013	1734	1	0	1	0	0	0	copy fasta	SLC15A4	chr12	128788194	128828958
SLC15A4_chr12_128788194_128828958	0/0	c0014	1734	1	0	1	0	0	0	copy fasta	SLC15A4	chr12	128788194	128828958
SLC15A4_chr12_128788194_128828958	0/0	c0015	1734	1	0	0	0	0	1	copy fasta	SLC15A4	chr12	128788194	128828958
SLC15A4_chr12_128788194_128828958	0/0	c0016	1734	1	0	1	0	0	0	copy fasta	SLC15A4	chr12	128788194	128828958
SLC15A4_chr12_128788194_128828958	0/0	c0017	1734	1	0	0	1	0	0	copy fasta	SLC15A4	chr12	128788194	128828958
SLC15A4_chr12_128788194_128828958	0/0	c0018	1734	1	0	0	1	0	0	copy fasta	SLC15A4	chr12	128788194	128828958
SLC15A4_chr12_128788194_128828958	0/0	c0019	1734	1	1	0	0	0	0	copy fasta	SLC15A4	chr12	128788194	128828958
SLC15A4_chr12_128788194_128828958	0/0	c0020	1734	1	0	0	1	0	0	copy fasta	SLC15A4	chr12	128788194	128828958
SLC15A4_chr12_128788194_128828958	0/0	c0021	1734	1	0	0	1	0	0	copy fasta	SLC15A4	chr12	128788194	128828958
SLC15A4_chr12_128788194_128828958	0/0	c0022	1734	1	1	0	0	0	0	copy fasta	SLC15A4	chr12	128788194	128828958
SLC15A4_chr12_128788194_128828958	0/0	c0023	1734	1	0	1	0	0	0	copy fasta	SLC15A4	chr12	128788194	128828958
SLC15A4_chr12_128788194_128828958	0/0	c0024	1734	1	1	0	0	0	0	copy fasta	SLC15A4	chr12	128788194	128828958
SLC15A4_chr12_128788194_128828958	0/0	c0025	1722	1	0	0	1	0	0	copy fasta	SLC15A4	chr12	128788194	128828958
SLC15A5_chr12_16183485_16282685	0/0	c0001	1740	106	11	22	60	2	11	copy fasta	SLC15A5	chr12	16183485	16282685
SLC15A5_chr12_16183485_16282685	0/1	c0002	1740	69	16	13	27	5	7	copy fasta	SLC15A5	chr12	16183485	16282685
SLC15A5_chr12_16183485_16282685	0/0	c0003	1740	39	17	13	4	1	4	copy fasta	SLC15A5	chr12	16183485	16282685
SLC15A5_chr12_16183485_16282685	0/0	c0004	1740	27	10	6	6	2	3	copy fasta	SLC15A5	chr12	16183485	16282685