JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SLC15A5_chr12_16183485_16282685	0/0	c0005	1740	20	2	5	11	0	2	copy fasta	SLC15A5	chr12	16183485	16282685
SLC15A5_chr12_16183485_16282685	0/0	c0006	1740	8	1	1	4	0	2	copy fasta	SLC15A5	chr12	16183485	16282685
SLC15A5_chr12_16183485_16282685	0/0	c0007	1740	6	6	0	0	0	0	copy fasta	SLC15A5	chr12	16183485	16282685
SLC15A5_chr12_16183485_16282685	0/0	c0008	1740	4	2	2	0	0	0	copy fasta	SLC15A5	chr12	16183485	16282685
SLC15A5_chr12_16183485_16282685	0/0	c0009	1740	4	2	0	0	0	2	copy fasta	SLC15A5	chr12	16183485	16282685
SLC15A5_chr12_16183485_16282685	0/0	c0010	1740	3	2	1	0	0	0	copy fasta	SLC15A5	chr12	16183485	16282685
SLC15A5_chr12_16183485_16282685	0/0	c0011	1740	3	2	1	0	0	0	copy fasta	SLC15A5	chr12	16183485	16282685
SLC15A5_chr12_16183485_16282685	0/0	c0012	1740	3	0	0	3	0	0	copy fasta	SLC15A5	chr12	16183485	16282685
SLC15A5_chr12_16183485_16282685	0/0	c0013	1740	2	0	0	2	0	0	copy fasta	SLC15A5	chr12	16183485	16282685
SLC15A5_chr12_16183485_16282685	0/0	c0014	1740	2	2	0	0	0	0	copy fasta	SLC15A5	chr12	16183485	16282685
SLC15A5_chr12_16183485_16282685	0/0	c0015	1740	2	2	0	0	0	0	copy fasta	SLC15A5	chr12	16183485	16282685
SLC15A5_chr12_16183485_16282685	0/0	c0016	1740	2	0	0	2	0	0	copy fasta	SLC15A5	chr12	16183485	16282685
SLC15A5_chr12_16183485_16282685	0/0	c0017	1740	2	0	0	2	0	0	copy fasta	SLC15A5	chr12	16183485	16282685
SLC15A5_chr12_16183485_16282685	0/0	c0018	1740	2	2	0	0	0	0	copy fasta	SLC15A5	chr12	16183485	16282685
SLC15A5_chr12_16183485_16282685	0/0	c0019	1740	2	0	0	2	0	0	copy fasta	SLC15A5	chr12	16183485	16282685
SLC15A5_chr12_16183485_16282685	0/0	c0020	1740	1	0	0	1	0	0	copy fasta	SLC15A5	chr12	16183485	16282685
SLC15A5_chr12_16183485_16282685	0/0	c0021	1740	1	1	0	0	0	0	copy fasta	SLC15A5	chr12	16183485	16282685
SLC15A5_chr12_16183485_16282685	0/0	c0022	1740	1	1	0	0	0	0	copy fasta	SLC15A5	chr12	16183485	16282685
SLC15A5_chr12_16183485_16282685	1/0	c0023	1740	1	0	0	0	0	0	copy fasta	SLC15A5	chr12	16183485	16282685
SLC15A5_chr12_16183485_16282685	0/0	c0024	1740	1	1	0	0	0	0	copy fasta	SLC15A5	chr12	16183485	16282685
SLC15A5_chr12_16183485_16282685	0/0	c0025	1740	1	1	0	0	0	0	copy fasta	SLC15A5	chr12	16183485	16282685
SLC15A5_chr12_16183485_16282685	0/0	c0026	1740	1	1	0	0	0	0	copy fasta	SLC15A5	chr12	16183485	16282685
SLC15A5_chr12_16183485_16282685	0/0	c0027	1740	1	0	0	1	0	0	copy fasta	SLC15A5	chr12	16183485	16282685
SLC15A5_chr12_16183485_16282685	0/0	c0028	1740	1	1	0	0	0	0	copy fasta	SLC15A5	chr12	16183485	16282685
SLC15A5_chr12_16183485_16282685	0/0	c0029	1740	1	0	0	1	0	0	copy fasta	SLC15A5	chr12	16183485	16282685
SLC15A5_chr12_16183485_16282685	0/0	c0030	1740	1	1	0	0	0	0	copy fasta	SLC15A5	chr12	16183485	16282685
SLC15A5_chr12_16183485_16282685	0/0	c0031	1740	1	1	0	0	0	0	copy fasta	SLC15A5	chr12	16183485	16282685
SLC15A5_chr12_16183485_16282685	0/0	c0032	1740	1	1	0	0	0	0	copy fasta	SLC15A5	chr12	16183485	16282685
SLC15A5_chr12_16183485_16282685	0/0	c0033	1740	1	0	0	0	0	1	copy fasta	SLC15A5	chr12	16183485	16282685
SLC15A5_chr12_16183485_16282685	0/0	c0034	1740	1	1	0	0	0	0	copy fasta	SLC15A5	chr12	16183485	16282685
SLC15A5_chr12_16183485_16282685	0/0	c0035	1740	1	1	0	0	0	0	copy fasta	SLC15A5	chr12	16183485	16282685
SLC15A5_chr12_16183485_16282685	0/0	c0036	1740	1	1	0	0	0	0	copy fasta	SLC15A5	chr12	16183485	16282685
SLC15A5_chr12_16183485_16282685	0/0	c0037	1740	1	1	0	0	0	0	copy fasta	SLC15A5	chr12	16183485	16282685
SLC16A10_chr6_111082503_111236194	1/1	c0001	1548	230	76	50	70	3	29	copy fasta	SLC16A10	chr6	111082503	111236194
SLC16A10_chr6_111082503_111236194	0/0	c0002	1548	9	2	2	4	1	0	copy fasta	SLC16A10	chr6	111082503	111236194
SLC16A10_chr6_111082503_111236194	0/0	c0003	1548	5	0	3	0	0	2	copy fasta	SLC16A10	chr6	111082503	111236194
SLC16A10_chr6_111082503_111236194	0/0	c0004	1548	1	0	0	0	0	1	copy fasta	SLC16A10	chr6	111082503	111236194
SLC16A10_chr6_111082503_111236194	0/0	c0005	1548	1	0	1	0	0	0	copy fasta	SLC16A10	chr6	111082503	111236194
SLC16A10_chr6_111082503_111236194	0/0	c0006	1548	1	1	0	0	0	0	copy fasta	SLC16A10	chr6	111082503	111236194
SLC16A10_chr6_111082503_111236194	0/0	c0007	1548	1	0	1	0	0	0	copy fasta	SLC16A10	chr6	111082503	111236194
SLC16A10_chr6_111082503_111236194	0/0	c0008	1548	1	0	1	0	0	0	copy fasta	SLC16A10	chr6	111082503	111236194
SLC16A10_chr6_111082503_111236194	0/0	c0009	1548	1	1	0	0	0	0	copy fasta	SLC16A10	chr6	111082503	111236194
SLC16A11_chr17_7036621_7049092	1/1	c0001	1344	316	48	53	154	13	46	copy fasta	SLC16A11	chr17	7036621	7049092
SLC16A11_chr17_7036621_7049092	0/0	c0002	1344	32	1	14	17	0	0	copy fasta	SLC16A11	chr17	7036621	7049092
SLC16A11_chr17_7036621_7049092	0/0	c0003	1344	18	18	0	0	0	0	copy fasta	SLC16A11	chr17	7036621	7049092
SLC16A11_chr17_7036621_7049092	0/0	c0004	1344	15	14	1	0	0	0	copy fasta	SLC16A11	chr17	7036621	7049092
SLC16A11_chr17_7036621_7049092	0/0	c0005	1344	8	7	1	0	0	0	copy fasta	SLC16A11	chr17	7036621	7049092
SLC16A11_chr17_7036621_7049092	0/0	c0006	1344	7	0	3	4	0	0	copy fasta	SLC16A11	chr17	7036621	7049092
SLC16A11_chr17_7036621_7049092	0/0	c0007	1344	5	5	0	0	0	0	copy fasta	SLC16A11	chr17	7036621	7049092
SLC16A11_chr17_7036621_7049092	0/0	c0008	1344	4	0	3	0	1	0	copy fasta	SLC16A11	chr17	7036621	7049092