JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SLC16A11_chr17_7036621_7049092	0/0	c0009	1344	3	0	3	0	0	0	copy fasta	SLC16A11	chr17	7036621	7049092
SLC16A11_chr17_7036621_7049092	0/0	c0010	1344	2	2	0	0	0	0	copy fasta	SLC16A11	chr17	7036621	7049092
SLC16A11_chr17_7036621_7049092	0/0	c0011	1344	1	0	0	1	0	0	copy fasta	SLC16A11	chr17	7036621	7049092
SLC16A11_chr17_7036621_7049092	0/0	c0012	1344	1	0	1	0	0	0	copy fasta	SLC16A11	chr17	7036621	7049092
SLC16A11_chr17_7036621_7049092	0/0	c0013	1344	1	0	1	0	0	0	copy fasta	SLC16A11	chr17	7036621	7049092
SLC16A11_chr17_7036621_7049092	0/0	c0014	1344	1	0	0	1	0	0	copy fasta	SLC16A11	chr17	7036621	7049092
SLC16A11_chr17_7036621_7049092	0/0	c0015	1344	1	0	0	1	0	0	copy fasta	SLC16A11	chr17	7036621	7049092
SLC16A11_chr17_7036621_7049092	0/0	c0016	1344	1	1	0	0	0	0	copy fasta	SLC16A11	chr17	7036621	7049092
SLC16A11_chr17_7036621_7049092	0/0	c0017	1344	1	0	0	1	0	0	copy fasta	SLC16A11	chr17	7036621	7049092
SLC16A11_chr17_7036621_7049092	0/0	c0018	1344	1	0	0	1	0	0	copy fasta	SLC16A11	chr17	7036621	7049092
SLC16A11_chr17_7036621_7049092	0/0	c0019	1344	1	1	0	0	0	0	copy fasta	SLC16A11	chr17	7036621	7049092
SLC16A11_chr17_7036621_7049092	0/0	c0020	1344	1	1	0	0	0	0	copy fasta	SLC16A11	chr17	7036621	7049092
SLC16A12_chr10_89425299_89540594	1/1	c0001	1551	258	83	55	89	7	22	copy fasta	SLC16A12	chr10	89425299	89540594
SLC16A12_chr10_89425299_89540594	0/0	c0002	1551	32	1	0	28	1	2	copy fasta	SLC16A12	chr10	89425299	89540594
SLC16A12_chr10_89425299_89540594	0/0	c0003	1551	1	0	0	1	0	0	copy fasta	SLC16A12	chr10	89425299	89540594
SLC16A12_chr10_89425299_89540594	0/0	c0004	1551	1	0	1	0	0	0	copy fasta	SLC16A12	chr10	89425299	89540594
SLC16A13_chr17_7031015_7045117	0/1	c0001	1281	136	6	39	65	10	15	copy fasta	SLC16A13	chr17	7031015	7045117
SLC16A13_chr17_7031015_7045117	0/0	c0002	1281	85	33	8	40	0	4	copy fasta	SLC16A13	chr17	7031015	7045117
SLC16A13_chr17_7031015_7045117	1/0	c0003	1281	68	31	7	13	1	15	copy fasta	SLC16A13	chr17	7031015	7045117
SLC16A13_chr17_7031015_7045117	0/0	c0004	1281	68	22	14	18	5	9	copy fasta	SLC16A13	chr17	7031015	7045117
SLC16A13_chr17_7031015_7045117	0/0	c0005	1281	34	1	16	17	0	0	copy fasta	SLC16A13	chr17	7031015	7045117
SLC16A13_chr17_7031015_7045117	0/0	c0006	1281	16	0	0	16	0	0	copy fasta	SLC16A13	chr17	7031015	7045117
SLC16A13_chr17_7031015_7045117	0/0	c0007	1281	5	0	0	5	0	0	copy fasta	SLC16A13	chr17	7031015	7045117
SLC16A13_chr17_7031015_7045117	0/0	c0008	1281	2	2	0	0	0	0	copy fasta	SLC16A13	chr17	7031015	7045117
SLC16A13_chr17_7031015_7045117	0/0	c0009	1281	1	0	0	1	0	0	copy fasta	SLC16A13	chr17	7031015	7045117
SLC16A13_chr17_7031015_7045117	0/0	c0010	1281	1	0	0	1	0	0	copy fasta	SLC16A13	chr17	7031015	7045117
SLC16A13_chr17_7031015_7045117	0/0	c0011	1281	1	0	0	1	0	0	copy fasta	SLC16A13	chr17	7031015	7045117
SLC16A13_chr17_7031015_7045117	0/0	c0012	1281	1	1	0	0	0	0	copy fasta	SLC16A13	chr17	7031015	7045117
SLC16A13_chr17_7031015_7045117	0/0	c0013	1281	1	1	0	0	0	0	copy fasta	SLC16A13	chr17	7031015	7045117
SLC16A13_chr17_7031015_7045117	0/0	c0014	1281	1	1	0	0	0	0	copy fasta	SLC16A13	chr17	7031015	7045117
SLC16A13_chr17_7031015_7045117	0/0	c0015	1281	1	0	0	1	0	0	copy fasta	SLC16A13	chr17	7031015	7045117
SLC16A13_chr17_7031015_7045117	0/0	c0016	1281	1	0	0	1	0	0	copy fasta	SLC16A13	chr17	7031015	7045117
SLC16A13_chr17_7031015_7045117	0/0	c0017	1281	1	1	0	0	0	0	copy fasta	SLC16A13	chr17	7031015	7045117
SLC16A13_chr17_7031015_7045117	0/0	c0018	1281	1	0	0	0	0	1	copy fasta	SLC16A13	chr17	7031015	7045117
SLC16A13_chr17_7031015_7045117	0/0	c0019	1281	1	1	0	0	0	0	copy fasta	SLC16A13	chr17	7031015	7045117
SLC16A13_chr17_7031015_7045117	0/0	c0020	1281	1	0	0	1	0	0	copy fasta	SLC16A13	chr17	7031015	7045117
SLC16A14_chr2_230029982_230073924	1/1	c0001	1533	390	84	72	174	17	41	copy fasta	SLC16A14	chr2	230029982	230073924
SLC16A14_chr2_230029982_230073924	0/0	c0002	1533	7	7	0	0	0	0	copy fasta	SLC16A14	chr2	230029982	230073924
SLC16A14_chr2_230029982_230073924	0/0	c0003	1533	6	0	4	0	0	2	copy fasta	SLC16A14	chr2	230029982	230073924
SLC16A14_chr2_230029982_230073924	0/0	c0004	1533	5	0	0	4	0	1	copy fasta	SLC16A14	chr2	230029982	230073924
SLC16A14_chr2_230029982_230073924	0/0	c0005	1533	5	0	2	0	1	2	copy fasta	SLC16A14	chr2	230029982	230073924
SLC16A14_chr2_230029982_230073924	0/0	c0006	1533	3	3	0	0	0	0	copy fasta	SLC16A14	chr2	230029982	230073924
SLC16A14_chr2_230029982_230073924	0/0	c0007	1533	2	2	0	0	0	0	copy fasta	SLC16A14	chr2	230029982	230073924
SLC16A14_chr2_230029982_230073924	0/0	c0008	1533	1	1	0	0	0	0	copy fasta	SLC16A14	chr2	230029982	230073924
SLC16A14_chr2_230029982_230073924	0/0	c0009	1533	1	1	0	0	0	0	copy fasta	SLC16A14	chr2	230029982	230073924
SLC16A1_chr1_112906847_112961196	0/1	c0001	1503	218	69	35	91	3	19	copy fasta	SLC16A1	chr1	112906847	112961196
SLC16A1_chr1_112906847_112961196	1/0	c0002	1503	117	7	29	62	5	13	copy fasta	SLC16A1	chr1	112906847	112961196
SLC16A1_chr1_112906847_112961196	0/0	c0003	1503	5	3	2	0	0	0	copy fasta	SLC16A1	chr1	112906847	112961196
SLC16A1_chr1_112906847_112961196	0/0	c0004	1503	2	2	0	0	0	0	copy fasta	SLC16A1	chr1	112906847	112961196
SLC16A1_chr1_112906847_112961196	0/0	c0005	1503	1	1	0	0	0	0	copy fasta	SLC16A1	chr1	112906847	112961196