JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SLC16A1_chr1_112906847_112961196	0/0	c0006	1503	1	0	0	1	0	0	copy fasta	SLC16A1	chr1	112906847	112961196
SLC16A1_chr1_112906847_112961196	0/0	c0007	1503	1	1	0	0	0	0	copy fasta	SLC16A1	chr1	112906847	112961196
SLC16A1_chr1_112906847_112961196	0/0	c0008	1503	1	1	0	0	0	0	copy fasta	SLC16A1	chr1	112906847	112961196
SLC16A2_chrX_74416493_74538916	0/0	c0001	1620	158	46	17	75	6	14	copy fasta	SLC16A2	chrX	74416493	74538916
SLC16A2_chrX_74416493_74538916	1/1	c0002	1620	69	20	29	2	3	13	copy fasta	SLC16A2	chrX	74416493	74538916
SLC16A2_chrX_74416493_74538916	0/0	c0003	1620	3	1	2	0	0	0	copy fasta	SLC16A2	chrX	74416493	74538916
SLC16A2_chrX_74416493_74538916	0/0	c0004	1621	2	0	0	1	0	1	copy fasta	SLC16A2	chrX	74416493	74538916
SLC16A2_chrX_74416493_74538916	0/0	c0005	1620	2	2	0	0	0	0	copy fasta	SLC16A2	chrX	74416493	74538916
SLC16A2_chrX_74416493_74538916	0/0	c0006	1620	1	0	1	0	0	0	copy fasta	SLC16A2	chrX	74416493	74538916
SLC16A3_chr17_82224042_82245086	0/1	c0001	1398	391	90	80	161	14	45	copy fasta	SLC16A3	chr17	82224042	82245086
SLC16A3_chr17_82224042_82245086	0/0	c0002	1398	7	0	0	4	0	3	copy fasta	SLC16A3	chr17	82224042	82245086
SLC16A3_chr17_82224042_82245086	0/0	c0003	1398	3	3	0	0	0	0	copy fasta	SLC16A3	chr17	82224042	82245086
SLC16A3_chr17_82224042_82245086	0/0	c0004	1398	1	1	0	0	0	0	copy fasta	SLC16A3	chr17	82224042	82245086
SLC16A3_chr17_82224042_82245086	0/0	c0005	1398	1	0	0	0	0	1	copy fasta	SLC16A3	chr17	82224042	82245086
SLC16A3_chr17_82224042_82245086	0/0	c0006	1398	1	0	0	0	0	1	copy fasta	SLC16A3	chr17	82224042	82245086
SLC16A3_chr17_82224042_82245086	0/0	c0007	1398	1	0	1	0	0	0	copy fasta	SLC16A3	chr17	82224042	82245086
SLC16A3_chr17_82224042_82245086	0/0	c0008	1398	1	0	0	1	0	0	copy fasta	SLC16A3	chr17	82224042	82245086
SLC16A3_chr17_82224042_82245086	1/0	c0009	1398	1	0	0	0	0	0	copy fasta	SLC16A3	chr17	82224042	82245086
SLC16A3_chr17_82224042_82245086	0/0	c0010	1398	1	1	0	0	0	0	copy fasta	SLC16A3	chr17	82224042	82245086
SLC16A3_chr17_82224042_82245086	0/0	c0011	1398	1	1	0	0	0	0	copy fasta	SLC16A3	chr17	82224042	82245086
SLC16A3_chr17_82224042_82245086	0/0	c0012	1398	1	0	1	0	0	0	copy fasta	SLC16A3	chr17	82224042	82245086
SLC16A4_chr1_110357857_110396026	1/1	c0001	1464	294	89	58	113	7	25	copy fasta	SLC16A4	chr1	110357857	110396026
SLC16A4_chr1_110357857_110396026	0/0	c0002	1464	75	0	6	57	3	9	copy fasta	SLC16A4	chr1	110357857	110396026
SLC16A4_chr1_110357857_110396026	0/0	c0003	1464	51	0	7	37	1	6	copy fasta	SLC16A4	chr1	110357857	110396026
SLC16A4_chr1_110357857_110396026	0/0	c0004	1464	5	0	3	0	1	1	copy fasta	SLC16A4	chr1	110357857	110396026
SLC16A4_chr1_110357857_110396026	0/0	c0005	1464	4	4	0	0	0	0	copy fasta	SLC16A4	chr1	110357857	110396026
SLC16A4_chr1_110357857_110396026	0/0	c0006	1475	1	0	0	1	0	0	copy fasta	SLC16A4	chr1	110357857	110396026
SLC16A4_chr1_110357857_110396026	0/0	c0007	1464	1	0	0	0	0	1	copy fasta	SLC16A4	chr1	110357857	110396026
SLC16A4_chr1_110357857_110396026	0/0	c0008	1464	1	1	0	0	0	0	copy fasta	SLC16A4	chr1	110357857	110396026
SLC16A5_chr17_75082954_75111162	0/1	c0001	1518	237	65	51	70	12	38	copy fasta	SLC16A5	chr17	75082954	75111162
SLC16A5_chr17_75082954_75111162	1/0	c0002	1518	167	19	28	101	6	12	copy fasta	SLC16A5	chr17	75082954	75111162
SLC16A5_chr17_75082954_75111162	0/0	c0003	1518	4	4	0	0	0	0	copy fasta	SLC16A5	chr17	75082954	75111162
SLC16A5_chr17_75082954_75111162	0/0	c0004	1518	2	2	0	0	0	0	copy fasta	SLC16A5	chr17	75082954	75111162
SLC16A5_chr17_75082954_75111162	0/0	c0005	1518	2	0	0	2	0	0	copy fasta	SLC16A5	chr17	75082954	75111162
SLC16A5_chr17_75082954_75111162	0/0	c0006	1518	1	1	0	0	0	0	copy fasta	SLC16A5	chr17	75082954	75111162
SLC16A5_chr17_75082954_75111162	0/0	c0007	1518	1	1	0	0	0	0	copy fasta	SLC16A5	chr17	75082954	75111162
SLC16A5_chr17_75082954_75111162	0/0	c0008	1500	1	0	1	0	0	0	copy fasta	SLC16A5	chr17	75082954	75111162
SLC16A5_chr17_75082954_75111162	0/0	c0009	1518	1	1	0	0	0	0	copy fasta	SLC16A5	chr17	75082954	75111162
SLC16A5_chr17_75082954_75111162	0/0	c0010	1518	1	1	0	0	0	0	copy fasta	SLC16A5	chr17	75082954	75111162
SLC16A5_chr17_75082954_75111162	0/0	c0011	1518	1	0	0	1	0	0	copy fasta	SLC16A5	chr17	75082954	75111162
SLC16A6_chr17_68262026_68296127	1/0	c0001	1572	182	15	33	100	9	24	copy fasta	SLC16A6	chr17	68262026	68296127
SLC16A6_chr17_68262026_68296127	0/0	c0002	1572	110	23	25	43	4	15	copy fasta	SLC16A6	chr17	68262026	68296127
SLC16A6_chr17_68262026_68296127	0/1	c0003	1572	43	10	9	15	4	4	copy fasta	SLC16A6	chr17	68262026	68296127
SLC16A6_chr17_68262026_68296127	0/0	c0004	1572	25	13	6	5	0	1	copy fasta	SLC16A6	chr17	68262026	68296127
SLC16A6_chr17_68262026_68296127	0/0	c0005	1572	20	14	5	1	0	0	copy fasta	SLC16A6	chr17	68262026	68296127
SLC16A6_chr17_68262026_68296127	0/0	c0006	1572	5	5	0	0	0	0	copy fasta	SLC16A6	chr17	68262026	68296127
SLC16A6_chr17_68262026_68296127	0/0	c0007	1572	4	0	0	4	0	0	copy fasta	SLC16A6	chr17	68262026	68296127
SLC16A6_chr17_68262026_68296127	0/0	c0008	1572	4	4	0	0	0	0	copy fasta	SLC16A6	chr17	68262026	68296127
SLC16A6_chr17_68262026_68296127	0/0	c0009	1572	3	3	0	0	0	0	copy fasta	SLC16A6	chr17	68262026	68296127
SLC16A6_chr17_68262026_68296127	0/0	c0010	1572	2	0	0	0	0	2	copy fasta	SLC16A6	chr17	68262026	68296127