JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ATP2B2_chr3_10319023_10510586	0/0	c0020	3732	1	0	0	1	0	0	copy fasta	ATP2B2	chr3	10319023	10510586
ATP2B2_chr3_10319023_10510586	0/0	c0021	3732	1	0	1	0	0	0	copy fasta	ATP2B2	chr3	10319023	10510586
ATP2B2_chr3_10319023_10510586	0/0	c0022	3732	1	1	0	0	0	0	copy fasta	ATP2B2	chr3	10319023	10510586
ATP2B2_chr3_10319023_10510586	0/0	c0023	3732	1	0	0	0	0	1	copy fasta	ATP2B2	chr3	10319023	10510586
ATP2B2_chr3_10319023_10510586	0/0	c0024	3732	1	1	0	0	0	0	copy fasta	ATP2B2	chr3	10319023	10510586
ATP2B2_chr3_10319023_10510586	0/0	c0025	3732	1	0	1	0	0	0	copy fasta	ATP2B2	chr3	10319023	10510586
ATP2B2_chr3_10319023_10510586	0/0	c0026	3732	1	1	0	0	0	0	copy fasta	ATP2B2	chr3	10319023	10510586
ATP2B2_chr3_10319023_10510586	0/0	c0027	3732	1	1	0	0	0	0	copy fasta	ATP2B2	chr3	10319023	10510586
ATP2B2_chr3_10319023_10510586	0/0	c0028	3732	1	1	0	0	0	0	copy fasta	ATP2B2	chr3	10319023	10510586
ATP2B2_chr3_10319023_10510586	0/0	c0029	3732	1	0	1	0	0	0	copy fasta	ATP2B2	chr3	10319023	10510586
ATP2B2_chr3_10319023_10510586	0/0	c0030	3732	1	1	0	0	0	0	copy fasta	ATP2B2	chr3	10319023	10510586
ATP2B2_chr3_10319023_10510586	0/0	c0031	3732	1	1	0	0	0	0	copy fasta	ATP2B2	chr3	10319023	10510586
ATP2B2_chr3_10319023_10510586	0/0	c0032	3732	1	0	0	0	0	1	copy fasta	ATP2B2	chr3	10319023	10510586
ATP2B2_chr3_10319023_10510586	0/0	c0033	3732	1	0	0	0	0	1	copy fasta	ATP2B2	chr3	10319023	10510586
ATP2B2_chr3_10319023_10510586	0/0	c0034	3732	1	1	0	0	0	0	copy fasta	ATP2B2	chr3	10319023	10510586
ATP2B2_chr3_10319023_10510586	0/0	c0035	3732	1	1	0	0	0	0	copy fasta	ATP2B2	chr3	10319023	10510586
ATP2B2_chr3_10319023_10510586	0/0	c0036	3732	1	1	0	0	0	0	copy fasta	ATP2B2	chr3	10319023	10510586
ATP2B2_chr3_10319023_10510586	0/0	c0037	3732	1	0	1	0	0	0	copy fasta	ATP2B2	chr3	10319023	10510586
ATP2B3_chrX_153512642_153587929	0/0	c0001	3663	119	49	16	35	5	14	copy fasta	ATP2B3	chrX	153512642	153587929
ATP2B3_chrX_153512642_153587929	0/1	c0002	3663	109	5	25	63	1	14	copy fasta	ATP2B3	chrX	153512642	153587929
ATP2B3_chrX_153512642_153587929	0/0	c0003	3663	12	10	2	0	0	0	copy fasta	ATP2B3	chrX	153512642	153587929
ATP2B3_chrX_153512642_153587929	1/0	c0004	3663	4	2	1	0	0	0	copy fasta	ATP2B3	chrX	153512642	153587929
ATP2B3_chrX_153512642_153587929	0/0	c0005	3663	2	2	0	0	0	0	copy fasta	ATP2B3	chrX	153512642	153587929
ATP2B3_chrX_153512642_153587929	0/0	c0006	3663	2	0	0	2	0	0	copy fasta	ATP2B3	chrX	153512642	153587929
ATP2B3_chrX_153512642_153587929	0/0	c0007	3663	2	0	0	2	0	0	copy fasta	ATP2B3	chrX	153512642	153587929
ATP2B3_chrX_153512642_153587929	0/0	c0008	3661	1	1	0	0	0	0	copy fasta	ATP2B3	chrX	153512642	153587929
ATP2B3_chrX_153512642_153587929	0/0	c0009	3663	1	1	0	0	0	0	copy fasta	ATP2B3	chrX	153512642	153587929
ATP2B3_chrX_153512642_153587929	0/0	c0010	3663	1	1	0	0	0	0	copy fasta	ATP2B3	chrX	153512642	153587929
ATP2B3_chrX_153512642_153587929	0/0	c0011	3663	1	1	0	0	0	0	copy fasta	ATP2B3	chrX	153512642	153587929
ATP2B3_chrX_153512642_153587929	0/0	c0012	3664	1	0	0	1	0	0	copy fasta	ATP2B3	chrX	153512642	153587929
ATP2B3_chrX_153512642_153587929	0/0	c0013	3664	1	0	0	1	0	0	copy fasta	ATP2B3	chrX	153512642	153587929
ATP2B3_chrX_153512642_153587929	0/0	c0014	3668	1	0	0	1	0	0	copy fasta	ATP2B3	chrX	153512642	153587929
ATP2B3_chrX_153512642_153587929	0/0	c0015	3663	1	1	0	0	0	0	copy fasta	ATP2B3	chrX	153512642	153587929
ATP2B3_chrX_153512642_153587929	0/0	c0016	3663	1	0	0	0	0	1	copy fasta	ATP2B3	chrX	153512642	153587929
ATP2B3_chrX_153512642_153587929	0/0	c0017	3663	1	0	0	0	1	0	copy fasta	ATP2B3	chrX	153512642	153587929
ATP2B3_chrX_153512642_153587929	0/0	c0018	3664	1	0	0	0	0	1	copy fasta	ATP2B3	chrX	153512642	153587929
ATP2B3_chrX_153512642_153587929	0/0	c0019	3665	1	0	0	1	0	0	copy fasta	ATP2B3	chrX	153512642	153587929
ATP2B3_chrX_153512642_153587929	0/0	c0020	3663	1	1	0	0	0	0	copy fasta	ATP2B3	chrX	153512642	153587929
ATP2B3_chrX_153512642_153587929	0/0	c0021	3663	1	1	0	0	0	0	copy fasta	ATP2B3	chrX	153512642	153587929
ATP2B3_chrX_153512642_153587929	0/0	c0022	3663	1	1	0	0	0	0	copy fasta	ATP2B3	chrX	153512642	153587929
ATP2B3_chrX_153512642_153587929	0/0	c0023	3665	1	0	0	1	0	0	copy fasta	ATP2B3	chrX	153512642	153587929
ATP2B3_chrX_153512642_153587929	0/0	c0024	3663	1	0	0	1	0	0	copy fasta	ATP2B3	chrX	153512642	153587929
ATP2B4_chr1_203621832_203749081	0/0	c0001	3618	236	39	35	133	11	18	copy fasta	ATP2B4	chr1	203621832	203749081
ATP2B4_chr1_203621832_203749081	1/1	c0002	3618	27	24	0	0	1	0	copy fasta	ATP2B4	chr1	203621832	203749081
ATP2B4_chr1_203621832_203749081	0/0	c0003	3618	21	2	3	14	0	2	copy fasta	ATP2B4	chr1	203621832	203749081
ATP2B4_chr1_203621832_203749081	0/0	c0004	3618	4	1	1	0	0	2	copy fasta	ATP2B4	chr1	203621832	203749081
ATP2B4_chr1_203621832_203749081	0/0	c0005	3618	3	3	0	0	0	0	copy fasta	ATP2B4	chr1	203621832	203749081
ATP2B4_chr1_203621832_203749081	0/0	c0006	3618	3	3	0	0	0	0	copy fasta	ATP2B4	chr1	203621832	203749081
ATP2B4_chr1_203621832_203749081	0/0	c0007	3618	2	0	1	0	1	0	copy fasta	ATP2B4	chr1	203621832	203749081
ATP2B4_chr1_203621832_203749081	0/0	c0008	3618	2	2	0	0	0	0	copy fasta	ATP2B4	chr1	203621832	203749081