JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SLC16A9_chr10_59645764_59714850	0/0	c0006	1530	1	0	1	0	0	0	copy fasta	SLC16A9	chr10	59645764	59714850
SLC16A9_chr10_59645764_59714850	0/0	c0007	1530	1	0	1	0	0	0	copy fasta	SLC16A9	chr10	59645764	59714850
SLC16A9_chr10_59645764_59714850	0/0	c0008	1530	1	0	0	1	0	0	copy fasta	SLC16A9	chr10	59645764	59714850
SLC16A9_chr10_59645764_59714850	0/0	c0009	1530	1	1	0	0	0	0	copy fasta	SLC16A9	chr10	59645764	59714850
SLC16A9_chr10_59645764_59714850	0/0	c0010	1530	1	0	0	0	1	0	copy fasta	SLC16A9	chr10	59645764	59714850
SLC16A9_chr10_59645764_59714850	0/0	c0011	1530	1	1	0	0	0	0	copy fasta	SLC16A9	chr10	59645764	59714850
SLC17A1_chr6_25777915_25837052	0/1	c0001	1404	238	67	48	90	7	25	copy fasta	SLC17A1	chr6	25777915	25837052
SLC17A1_chr6_25777915_25837052	1/0	c0002	1404	85	12	19	33	7	13	copy fasta	SLC17A1	chr6	25777915	25837052
SLC17A1_chr6_25777915_25837052	0/0	c0003	1404	12	0	0	12	0	0	copy fasta	SLC17A1	chr6	25777915	25837052
SLC17A1_chr6_25777915_25837052	0/0	c0004	1404	6	6	0	0	0	0	copy fasta	SLC17A1	chr6	25777915	25837052
SLC17A1_chr6_25777915_25837052	0/0	c0005	1404	2	2	0	0	0	0	copy fasta	SLC17A1	chr6	25777915	25837052
SLC17A1_chr6_25777915_25837052	0/0	c0006	1404	1	0	0	1	0	0	copy fasta	SLC17A1	chr6	25777915	25837052
SLC17A1_chr6_25777915_25837052	0/0	c0007	1404	1	0	0	1	0	0	copy fasta	SLC17A1	chr6	25777915	25837052
SLC17A1_chr6_25777915_25837052	0/0	c0008	1404	1	0	0	1	0	0	copy fasta	SLC17A1	chr6	25777915	25837052
SLC17A1_chr6_25777915_25837052	0/0	c0009	1404	1	1	0	0	0	0	copy fasta	SLC17A1	chr6	25777915	25837052
SLC17A1_chr6_25777915_25837052	0/0	c0010	1404	1	0	1	0	0	0	copy fasta	SLC17A1	chr6	25777915	25837052
SLC17A2_chr6_25907754_25935691	1/0	c0001	1437	188	64	29	63	8	23	copy fasta	SLC17A2	chr6	25907754	25935691
SLC17A2_chr6_25907754_25935691	0/1	c0002	1437	159	13	29	93	5	18	copy fasta	SLC17A2	chr6	25907754	25935691
SLC17A2_chr6_25907754_25935691	0/0	c0003	1437	24	15	5	2	1	1	copy fasta	SLC17A2	chr6	25907754	25935691
SLC17A2_chr6_25907754_25935691	0/0	c0004	1437	4	2	2	0	0	0	copy fasta	SLC17A2	chr6	25907754	25935691
SLC17A2_chr6_25907754_25935691	0/0	c0005	1437	1	1	0	0	0	0	copy fasta	SLC17A2	chr6	25907754	25935691
SLC17A2_chr6_25907754_25935691	0/0	c0006	1437	1	0	0	0	0	1	copy fasta	SLC17A2	chr6	25907754	25935691
SLC17A2_chr6_25907754_25935691	0/0	c0007	1437	1	1	0	0	0	0	copy fasta	SLC17A2	chr6	25907754	25935691
SLC17A2_chr6_25907754_25935691	0/0	c0008	1437	1	0	0	0	0	1	copy fasta	SLC17A2	chr6	25907754	25935691
SLC17A2_chr6_25907754_25935691	0/0	c0009	1437	1	0	1	0	0	0	copy fasta	SLC17A2	chr6	25907754	25935691
SLC17A3_chr6_25839856_25879243	0/0	c0001	1497	178	48	37	82	3	8	copy fasta	SLC17A3	chr6	25839856	25879243
SLC17A3_chr6_25839856_25879243	1/0	c0002	1497	89	12	18	34	7	17	copy fasta	SLC17A3	chr6	25839856	25879243
SLC17A3_chr6_25839856_25879243	0/0	c0003	1497	61	31	8	18	1	3	copy fasta	SLC17A3	chr6	25839856	25879243
SLC17A3_chr6_25839856_25879243	0/1	c0004	1497	17	1	3	1	3	8	copy fasta	SLC17A3	chr6	25839856	25879243
SLC17A3_chr6_25839856_25879243	0/0	c0005	1497	14	1	0	13	0	0	copy fasta	SLC17A3	chr6	25839856	25879243
SLC17A3_chr6_25839856_25879243	0/0	c0006	1497	4	0	0	1	0	3	copy fasta	SLC17A3	chr6	25839856	25879243
SLC17A3_chr6_25839856_25879243	0/0	c0007	1497	1	1	0	0	0	0	copy fasta	SLC17A3	chr6	25839856	25879243
SLC17A3_chr6_25839856_25879243	0/0	c0008	1497	1	0	0	0	0	1	copy fasta	SLC17A3	chr6	25839856	25879243
SLC17A3_chr6_25839856_25879243	0/0	c0009	1497	1	0	0	1	0	0	copy fasta	SLC17A3	chr6	25839856	25879243
SLC17A3_chr6_25839856_25879243	0/0	c0010	1497	1	0	0	1	0	0	copy fasta	SLC17A3	chr6	25839856	25879243
SLC17A3_chr6_25839856_25879243	0/0	c0011	1497	1	0	0	1	0	0	copy fasta	SLC17A3	chr6	25839856	25879243
SLC17A4_chr6_25749742_25786199	0/1	c0001	1494	138	46	20	53	4	14	copy fasta	SLC17A4	chr6	25749742	25786199
SLC17A4_chr6_25749742_25786199	0/0	c0002	1494	79	3	14	56	0	6	copy fasta	SLC17A4	chr6	25749742	25786199
SLC17A4_chr6_25749742_25786199	0/0	c0003	1494	52	2	14	22	5	9	copy fasta	SLC17A4	chr6	25749742	25786199
SLC17A4_chr6_25749742_25786199	0/0	c0004	1494	38	6	7	13	4	8	copy fasta	SLC17A4	chr6	25749742	25786199
SLC17A4_chr6_25749742_25786199	1/0	c0005	1494	28	18	6	1	1	1	copy fasta	SLC17A4	chr6	25749742	25786199
SLC17A4_chr6_25749742_25786199	0/0	c0006	1494	8	8	0	0	0	0	copy fasta	SLC17A4	chr6	25749742	25786199
SLC17A4_chr6_25749742_25786199	0/0	c0007	1494	5	0	1	0	2	2	copy fasta	SLC17A4	chr6	25749742	25786199
SLC17A4_chr6_25749742_25786199	0/0	c0008	1494	4	4	0	0	0	0	copy fasta	SLC17A4	chr6	25749742	25786199
SLC17A4_chr6_25749742_25786199	0/0	c0009	1494	3	0	0	3	0	0	copy fasta	SLC17A4	chr6	25749742	25786199
SLC17A4_chr6_25749742_25786199	0/0	c0010	1494	2	2	0	0	0	0	copy fasta	SLC17A4	chr6	25749742	25786199
SLC17A4_chr6_25749742_25786199	0/0	c0011	1494	2	2	0	0	0	0	copy fasta	SLC17A4	chr6	25749742	25786199
SLC17A4_chr6_25749742_25786199	0/0	c0012	1494	1	0	0	1	0	0	copy fasta	SLC17A4	chr6	25749742	25786199
SLC17A4_chr6_25749742_25786199	0/0	c0013	1494	1	0	1	0	0	0	copy fasta	SLC17A4	chr6	25749742	25786199
SLC17A4_chr6_25749742_25786199	0/0	c0014	1494	1	0	0	0	0	1	copy fasta	SLC17A4	chr6	25749742	25786199