JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SLC17A4_chr6_25749742_25786199	0/0	c0015	1494	1	0	0	1	0	0	copy fasta	SLC17A4	chr6	25749742	25786199
SLC17A4_chr6_25749742_25786199	0/0	c0016	1494	1	0	1	0	0	0	copy fasta	SLC17A4	chr6	25749742	25786199
SLC17A4_chr6_25749742_25786199	0/0	c0017	1494	1	0	0	0	0	1	copy fasta	SLC17A4	chr6	25749742	25786199
SLC17A4_chr6_25749742_25786199	0/0	c0018	1494	1	1	0	0	0	0	copy fasta	SLC17A4	chr6	25749742	25786199
SLC17A5_chr6_73588379_73658992	1/1	c0001	1488	213	66	34	84	10	17	copy fasta	SLC17A5	chr6	73588379	73658992
SLC17A5_chr6_73588379_73658992	0/0	c0002	1488	41	13	7	18	0	3	copy fasta	SLC17A5	chr6	73588379	73658992
SLC17A5_chr6_73588379_73658992	0/0	c0003	1488	40	2	19	15	2	2	copy fasta	SLC17A5	chr6	73588379	73658992
SLC17A5_chr6_73588379_73658992	0/0	c0004	1488	25	0	7	18	0	0	copy fasta	SLC17A5	chr6	73588379	73658992
SLC17A5_chr6_73588379_73658992	0/0	c0005	1488	1	0	0	1	0	0	copy fasta	SLC17A5	chr6	73588379	73658992
SLC17A5_chr6_73588379_73658992	0/0	c0006	1488	1	1	0	0	0	0	copy fasta	SLC17A5	chr6	73588379	73658992
SLC17A5_chr6_73588379_73658992	0/0	c0007	1488	1	1	0	0	0	0	copy fasta	SLC17A5	chr6	73588379	73658992
SLC17A5_chr6_73588379_73658992	0/0	c0008	1488	1	0	1	0	0	0	copy fasta	SLC17A5	chr6	73588379	73658992
SLC17A5_chr6_73588379_73658992	0/0	c0009	1488	1	1	0	0	0	0	copy fasta	SLC17A5	chr6	73588379	73658992
SLC17A6_chr11_22333381_22384503	1/1	c0001	1749	411	68	72	207	16	46	copy fasta	SLC17A6	chr11	22333381	22384503
SLC17A6_chr11_22333381_22384503	0/0	c0002	1749	16	16	0	0	0	0	copy fasta	SLC17A6	chr11	22333381	22384503
SLC17A6_chr11_22333381_22384503	0/0	c0003	1749	6	6	0	0	0	0	copy fasta	SLC17A6	chr11	22333381	22384503
SLC17A6_chr11_22333381_22384503	0/0	c0004	1749	4	4	0	0	0	0	copy fasta	SLC17A6	chr11	22333381	22384503
SLC17A6_chr11_22333381_22384503	0/0	c0005	1749	2	1	1	0	0	0	copy fasta	SLC17A6	chr11	22333381	22384503
SLC17A6_chr11_22333381_22384503	0/0	c0006	1749	2	0	2	0	0	0	copy fasta	SLC17A6	chr11	22333381	22384503
SLC17A6_chr11_22333381_22384503	0/0	c0007	1749	1	1	0	0	0	0	copy fasta	SLC17A6	chr11	22333381	22384503
SLC17A6_chr11_22333381_22384503	0/0	c0008	1749	1	0	0	0	0	1	copy fasta	SLC17A6	chr11	22333381	22384503
SLC17A6_chr11_22333381_22384503	0/0	c0009	1749	1	1	0	0	0	0	copy fasta	SLC17A6	chr11	22333381	22384503
SLC17A6_chr11_22333381_22384503	0/0	c0010	1749	1	0	0	0	0	1	copy fasta	SLC17A6	chr11	22333381	22384503
SLC17A6_chr11_22333381_22384503	0/0	c0011	1749	1	1	0	0	0	0	copy fasta	SLC17A6	chr11	22333381	22384503
SLC17A6_chr11_22333381_22384503	0/0	c0012	1749	1	1	0	0	0	0	copy fasta	SLC17A6	chr11	22333381	22384503
SLC17A6_chr11_22333381_22384503	0/0	c0013	1749	1	1	0	0	0	0	copy fasta	SLC17A6	chr11	22333381	22384503
SLC17A6_chr11_22333381_22384503	0/0	c0014	1749	1	0	1	0	0	0	copy fasta	SLC17A6	chr11	22333381	22384503
SLC17A6_chr11_22333381_22384503	0/0	c0015	1749	1	0	0	1	0	0	copy fasta	SLC17A6	chr11	22333381	22384503
SLC17A7_chr19_49424401_49446527	1/1	c0001	1683	398	89	80	165	16	46	copy fasta	SLC17A7	chr19	49424401	49446527
SLC17A7_chr19_49424401_49446527	0/0	c0002	1683	3	3	0	0	0	0	copy fasta	SLC17A7	chr19	49424401	49446527
SLC17A7_chr19_49424401_49446527	0/0	c0003	1683	3	0	0	0	0	3	copy fasta	SLC17A7	chr19	49424401	49446527
SLC17A7_chr19_49424401_49446527	0/0	c0004	1683	2	0	0	2	0	0	copy fasta	SLC17A7	chr19	49424401	49446527
SLC17A7_chr19_49424401_49446527	0/0	c0005	1657	1	0	0	1	0	0	copy fasta	SLC17A7	chr19	49424401	49446527
SLC17A7_chr19_49424401_49446527	0/0	c0006	1683	1	0	0	1	0	0	copy fasta	SLC17A7	chr19	49424401	49446527
SLC17A7_chr19_49424401_49446527	0/0	c0007	1683	1	0	0	1	0	0	copy fasta	SLC17A7	chr19	49424401	49446527
SLC17A7_chr19_49424401_49446527	0/0	c0008	1683	1	0	0	1	0	0	copy fasta	SLC17A7	chr19	49424401	49446527
SLC17A7_chr19_49424401_49446527	0/0	c0009	1683	1	0	0	1	0	0	copy fasta	SLC17A7	chr19	49424401	49446527
SLC17A7_chr19_49424401_49446527	0/0	c0010	1683	1	0	0	0	0	1	copy fasta	SLC17A7	chr19	49424401	49446527
SLC17A7_chr19_49424401_49446527	0/0	c0011	1683	1	0	0	1	0	0	copy fasta	SLC17A7	chr19	49424401	49446527
SLC17A7_chr19_49424401_49446527	0/0	c0012	1683	1	0	0	1	0	0	copy fasta	SLC17A7	chr19	49424401	49446527
SLC17A8_chr12_100352074_100427055	1/1	c0001	1770	288	72	56	115	8	35	copy fasta	SLC17A8	chr12	100352074	100427055
SLC17A8_chr12_100352074_100427055	0/0	c0002	1770	15	0	0	15	0	0	copy fasta	SLC17A8	chr12	100352074	100427055
SLC17A8_chr12_100352074_100427055	0/0	c0003	1770	2	2	0	0	0	0	copy fasta	SLC17A8	chr12	100352074	100427055
SLC17A8_chr12_100352074_100427055	0/0	c0004	1770	2	2	0	0	0	0	copy fasta	SLC17A8	chr12	100352074	100427055
SLC17A8_chr12_100352074_100427055	0/0	c0005	1770	2	2	0	0	0	0	copy fasta	SLC17A8	chr12	100352074	100427055
SLC17A8_chr12_100352074_100427055	0/0	c0006	1770	1	0	0	1	0	0	copy fasta	SLC17A8	chr12	100352074	100427055
SLC17A8_chr12_100352074_100427055	0/0	c0007	1770	1	0	0	1	0	0	copy fasta	SLC17A8	chr12	100352074	100427055
SLC17A8_chr12_100352074_100427055	0/0	c0008	1770	1	1	0	0	0	0	copy fasta	SLC17A8	chr12	100352074	100427055
SLC17A8_chr12_100352074_100427055	0/0	c0009	1770	1	0	0	0	0	1	copy fasta	SLC17A8	chr12	100352074	100427055
SLC17A8_chr12_100352074_100427055	0/0	c0010	1770	1	1	0	0	0	0	copy fasta	SLC17A8	chr12	100352074	100427055