JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SLC17A9_chr20_62947709_62974585	0/1	c0001	1311	275	50	52	130	11	31	copy fasta	SLC17A9	chr20	62947709	62974585
SLC17A9_chr20_62947709_62974585	0/0	c0002	1311	72	10	11	43	3	5	copy fasta	SLC17A9	chr20	62947709	62974585
SLC17A9_chr20_62947709_62974585	0/0	c0003	1311	29	1	7	16	2	3	copy fasta	SLC17A9	chr20	62947709	62974585
SLC17A9_chr20_62947709_62974585	0/0	c0004	1311	19	17	2	0	0	0	copy fasta	SLC17A9	chr20	62947709	62974585
SLC17A9_chr20_62947709_62974585	1/0	c0005	1311	9	8	0	0	0	0	copy fasta	SLC17A9	chr20	62947709	62974585
SLC17A9_chr20_62947709_62974585	0/0	c0006	1310	5	0	5	0	0	0	copy fasta	SLC17A9	chr20	62947709	62974585
SLC17A9_chr20_62947709_62974585	0/0	c0007	1311	4	4	0	0	0	0	copy fasta	SLC17A9	chr20	62947709	62974585
SLC17A9_chr20_62947709_62974585	0/0	c0008	1311	4	0	4	0	0	0	copy fasta	SLC17A9	chr20	62947709	62974585
SLC17A9_chr20_62947709_62974585	0/0	c0009	1311	3	3	0	0	0	0	copy fasta	SLC17A9	chr20	62947709	62974585
SLC17A9_chr20_62947709_62974585	0/0	c0010	1311	2	1	0	1	0	0	copy fasta	SLC17A9	chr20	62947709	62974585
SLC17A9_chr20_62947709_62974585	0/0	c0011	1311	1	0	0	1	0	0	copy fasta	SLC17A9	chr20	62947709	62974585
SLC17A9_chr20_62947709_62974585	0/0	c0012	1311	1	0	0	0	0	1	copy fasta	SLC17A9	chr20	62947709	62974585
SLC17A9_chr20_62947709_62974585	0/0	c0013	1311	1	0	1	0	0	0	copy fasta	SLC17A9	chr20	62947709	62974585
SLC17A9_chr20_62947709_62974585	0/0	c0014	1311	1	1	0	0	0	0	copy fasta	SLC17A9	chr20	62947709	62974585
SLC17A9_chr20_62947709_62974585	0/0	c0015	1311	1	1	0	0	0	0	copy fasta	SLC17A9	chr20	62947709	62974585
SLC17A9_chr20_62947709_62974585	0/0	c0016	1311	1	1	0	0	0	0	copy fasta	SLC17A9	chr20	62947709	62974585
SLC17A9_chr20_62947709_62974585	0/0	c0017	1311	1	0	0	1	0	0	copy fasta	SLC17A9	chr20	62947709	62974585
SLC17A9_chr20_62947709_62974585	0/0	c0018	1311	1	1	0	0	0	0	copy fasta	SLC17A9	chr20	62947709	62974585
SLC17A9_chr20_62947709_62974585	0/0	c0019	1311	1	0	0	1	0	0	copy fasta	SLC17A9	chr20	62947709	62974585
SLC17A9_chr20_62947709_62974585	0/0	c0020	1311	1	0	0	1	0	0	copy fasta	SLC17A9	chr20	62947709	62974585
SLC18A1_chr8_20139855_20188136	1/0	c0001	1578	106	11	22	54	3	15	copy fasta	SLC18A1	chr8	20139855	20188136
SLC18A1_chr8_20139855_20188136	0/0	c0002	1578	86	10	22	37	5	12	copy fasta	SLC18A1	chr8	20139855	20188136
SLC18A1_chr8_20139855_20188136	0/0	c0003	1578	77	30	8	34	0	5	copy fasta	SLC18A1	chr8	20139855	20188136
SLC18A1_chr8_20139855_20188136	0/0	c0004	1578	43	20	10	9	1	3	copy fasta	SLC18A1	chr8	20139855	20188136
SLC18A1_chr8_20139855_20188136	0/0	c0005	1578	36	0	6	28	0	2	copy fasta	SLC18A1	chr8	20139855	20188136
SLC18A1_chr8_20139855_20188136	0/0	c0006	1578	32	0	0	29	1	2	copy fasta	SLC18A1	chr8	20139855	20188136
SLC18A1_chr8_20139855_20188136	0/0	c0007	1578	13	1	1	5	4	2	copy fasta	SLC18A1	chr8	20139855	20188136
SLC18A1_chr8_20139855_20188136	0/0	c0008	1578	8	8	0	0	0	0	copy fasta	SLC18A1	chr8	20139855	20188136
SLC18A1_chr8_20139855_20188136	0/0	c0009	1578	4	4	0	0	0	0	copy fasta	SLC18A1	chr8	20139855	20188136
SLC18A1_chr8_20139855_20188136	0/0	c0010	1578	4	0	0	4	0	0	copy fasta	SLC18A1	chr8	20139855	20188136
SLC18A1_chr8_20139855_20188136	0/1	c0011	1578	3	0	1	0	1	0	copy fasta	SLC18A1	chr8	20139855	20188136
SLC18A1_chr8_20139855_20188136	0/0	c0012	1578	3	3	0	0	0	0	copy fasta	SLC18A1	chr8	20139855	20188136
SLC18A1_chr8_20139855_20188136	0/0	c0013	1578	2	2	0	0	0	0	copy fasta	SLC18A1	chr8	20139855	20188136
SLC18A1_chr8_20139855_20188136	0/0	c0014	1578	2	2	0	0	0	0	copy fasta	SLC18A1	chr8	20139855	20188136
SLC18A1_chr8_20139855_20188136	0/0	c0015	1578	1	1	0	0	0	0	copy fasta	SLC18A1	chr8	20139855	20188136
SLC18A1_chr8_20139855_20188136	0/0	c0016	1578	1	1	0	0	0	0	copy fasta	SLC18A1	chr8	20139855	20188136
SLC18A1_chr8_20139855_20188136	0/0	c0017	1578	1	0	0	1	0	0	copy fasta	SLC18A1	chr8	20139855	20188136
SLC18A1_chr8_20139855_20188136	0/0	c0018	1578	1	0	0	1	0	0	copy fasta	SLC18A1	chr8	20139855	20188136
SLC18A1_chr8_20139855_20188136	0/0	c0019	1578	1	1	0	0	0	0	copy fasta	SLC18A1	chr8	20139855	20188136
SLC18A1_chr8_20139855_20188136	0/0	c0020	1578	1	1	0	0	0	0	copy fasta	SLC18A1	chr8	20139855	20188136
SLC18A1_chr8_20139855_20188136	0/0	c0021	1578	1	1	0	0	0	0	copy fasta	SLC18A1	chr8	20139855	20188136
SLC18A1_chr8_20139855_20188136	0/0	c0022	1578	1	0	0	1	0	0	copy fasta	SLC18A1	chr8	20139855	20188136
SLC18A1_chr8_20139855_20188136	0/0	c0023	1578	1	0	1	0	0	0	copy fasta	SLC18A1	chr8	20139855	20188136
SLC18A1_chr8_20139855_20188136	0/0	c0024	1578	1	0	0	0	0	1	copy fasta	SLC18A1	chr8	20139855	20188136
SLC18A1_chr8_20139855_20188136	0/0	c0025	1578	1	0	0	1	0	0	copy fasta	SLC18A1	chr8	20139855	20188136
SLC18A1_chr8_20139855_20188136	0/0	c0026	1578	1	0	0	1	0	0	copy fasta	SLC18A1	chr8	20139855	20188136
SLC18A1_chr8_20139855_20188136	0/0	c0027	1578	1	0	0	0	1	0	copy fasta	SLC18A1	chr8	20139855	20188136
SLC18A1_chr8_20139855_20188136	0/0	c0028	1578	1	0	0	1	0	0	copy fasta	SLC18A1	chr8	20139855	20188136
SLC18A1_chr8_20139855_20188136	0/0	c0029	1578	1	0	1	0	0	0	copy fasta	SLC18A1	chr8	20139855	20188136
SLC18A2_chr10_117236114_117284430	1/1	c0001	1545	300	85	49	123	10	31	copy fasta	SLC18A2	chr10	117236114	117284430