JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SLC18A2_chr10_117236114_117284430	0/0	c0002	1545	29	6	7	13	0	3	copy fasta	SLC18A2	chr10	117236114	117284430
SLC18A2_chr10_117236114_117284430	0/0	c0003	1545	16	1	0	15	0	0	copy fasta	SLC18A2	chr10	117236114	117284430
SLC18A2_chr10_117236114_117284430	0/0	c0004	1545	4	1	1	2	0	0	copy fasta	SLC18A2	chr10	117236114	117284430
SLC18A2_chr10_117236114_117284430	0/0	c0005	1545	2	2	0	0	0	0	copy fasta	SLC18A2	chr10	117236114	117284430
SLC18A2_chr10_117236114_117284430	0/0	c0006	1545	1	1	0	0	0	0	copy fasta	SLC18A2	chr10	117236114	117284430
SLC18A2_chr10_117236114_117284430	0/0	c0007	1545	1	0	1	0	0	0	copy fasta	SLC18A2	chr10	117236114	117284430
SLC18A2_chr10_117236114_117284430	0/0	c0008	1545	1	0	0	1	0	0	copy fasta	SLC18A2	chr10	117236114	117284430
SLC18A2_chr10_117236114_117284430	0/0	c0009	1545	1	0	0	1	0	0	copy fasta	SLC18A2	chr10	117236114	117284430
SLC18A2_chr10_117236114_117284430	0/0	c0010	1545	1	0	0	1	0	0	copy fasta	SLC18A2	chr10	117236114	117284430
SLC18A3_chr10_49605310_49617720	0/1	c0001	1599	344	71	72	139	18	43	copy fasta	SLC18A3	chr10	49605310	49617720
SLC18A3_chr10_49605310_49617720	0/0	c0002	1599	72	1	4	67	0	0	copy fasta	SLC18A3	chr10	49605310	49617720
SLC18A3_chr10_49605310_49617720	0/0	c0003	1599	11	9	2	0	0	0	copy fasta	SLC18A3	chr10	49605310	49617720
SLC18A3_chr10_49605310_49617720	0/0	c0004	1599	5	0	0	5	0	0	copy fasta	SLC18A3	chr10	49605310	49617720
SLC18A3_chr10_49605310_49617720	0/0	c0005	1599	2	2	0	0	0	0	copy fasta	SLC18A3	chr10	49605310	49617720
SLC18A3_chr10_49605310_49617720	1/0	c0006	1599	2	1	0	0	0	0	copy fasta	SLC18A3	chr10	49605310	49617720
SLC18A3_chr10_49605310_49617720	0/0	c0007	1599	1	1	0	0	0	0	copy fasta	SLC18A3	chr10	49605310	49617720
SLC18A3_chr10_49605310_49617720	0/0	c0008	1599	1	0	1	0	0	0	copy fasta	SLC18A3	chr10	49605310	49617720
SLC18A3_chr10_49605310_49617720	0/0	c0009	1599	1	0	0	0	0	1	copy fasta	SLC18A3	chr10	49605310	49617720
SLC18A3_chr10_49605310_49617720	0/0	c0010	1599	1	1	0	0	0	0	copy fasta	SLC18A3	chr10	49605310	49617720
SLC18A3_chr10_49605310_49617720	0/0	c0011	1599	1	0	1	0	0	0	copy fasta	SLC18A3	chr10	49605310	49617720
SLC18A3_chr10_49605310_49617720	0/0	c0012	1599	1	0	0	1	0	0	copy fasta	SLC18A3	chr10	49605310	49617720
SLC18B1_chr6_132764370_132803637	1/1	c0001	1371	210	32	49	89	10	28	copy fasta	SLC18B1	chr6	132764370	132803637
SLC18B1_chr6_132764370_132803637	0/0	c0002	1371	18	18	0	0	0	0	copy fasta	SLC18B1	chr6	132764370	132803637
SLC18B1_chr6_132764370_132803637	0/0	c0003	1371	17	17	0	0	0	0	copy fasta	SLC18B1	chr6	132764370	132803637
SLC18B1_chr6_132764370_132803637	0/0	c0004	1371	14	7	1	3	1	2	copy fasta	SLC18B1	chr6	132764370	132803637
SLC18B1_chr6_132764370_132803637	0/0	c0005	1371	12	0	2	10	0	0	copy fasta	SLC18B1	chr6	132764370	132803637
SLC18B1_chr6_132764370_132803637	0/0	c0006	1371	12	9	0	0	1	2	copy fasta	SLC18B1	chr6	132764370	132803637
SLC18B1_chr6_132764370_132803637	0/0	c0007	1371	11	0	4	4	0	3	copy fasta	SLC18B1	chr6	132764370	132803637
SLC18B1_chr6_132764370_132803637	0/0	c0008	1371	2	0	0	2	0	0	copy fasta	SLC18B1	chr6	132764370	132803637
SLC18B1_chr6_132764370_132803637	0/0	c0009	1371	1	1	0	0	0	0	copy fasta	SLC18B1	chr6	132764370	132803637
SLC18B1_chr6_132764370_132803637	0/0	c0010	1371	1	0	1	0	0	0	copy fasta	SLC18B1	chr6	132764370	132803637
SLC18B1_chr6_132764370_132803637	0/0	c0011	1371	1	1	0	0	0	0	copy fasta	SLC18B1	chr6	132764370	132803637
SLC18B1_chr6_132764370_132803637	0/0	c0012	1371	1	1	0	0	0	0	copy fasta	SLC18B1	chr6	132764370	132803637
SLC18B1_chr6_132764370_132803637	0/0	c0013	1371	1	0	0	0	0	1	copy fasta	SLC18B1	chr6	132764370	132803637
SLC18B1_chr6_132764370_132803637	0/0	c0014	1371	1	0	0	1	0	0	copy fasta	SLC18B1	chr6	132764370	132803637
SLC18B1_chr6_132764370_132803637	0/0	c0015	1371	1	0	0	1	0	0	copy fasta	SLC18B1	chr6	132764370	132803637
SLC18B1_chr6_132764370_132803637	0/0	c0016	1371	1	0	1	0	0	0	copy fasta	SLC18B1	chr6	132764370	132803637
SLC19A1_chr21_45507565_45547440	1/0	c0001	1776	148	42	24	67	4	10	copy fasta	SLC19A1	chr21	45507565	45547440
SLC19A1_chr21_45507565_45547440	0/1	c0002	1776	120	21	28	46	7	17	copy fasta	SLC19A1	chr21	45507565	45547440
SLC19A1_chr21_45507565_45547440	0/0	c0003	1776	19	0	2	14	0	3	copy fasta	SLC19A1	chr21	45507565	45547440
SLC19A1_chr21_45507565_45547440	0/0	c0004	1776	11	11	0	0	0	0	copy fasta	SLC19A1	chr21	45507565	45547440
SLC19A1_chr21_45507565_45547440	0/0	c0005	1776	7	5	0	0	1	1	copy fasta	SLC19A1	chr21	45507565	45547440
SLC19A1_chr21_45507565_45547440	0/0	c0006	1776	3	0	1	0	2	0	copy fasta	SLC19A1	chr21	45507565	45547440
SLC19A1_chr21_45507565_45547440	0/0	c0007	1776	2	1	0	0	0	1	copy fasta	SLC19A1	chr21	45507565	45547440
SLC19A1_chr21_45507565_45547440	0/0	c0008	1776	2	0	0	0	0	2	copy fasta	SLC19A1	chr21	45507565	45547440
SLC19A1_chr21_45507565_45547440	0/0	c0009	1776	1	1	0	0	0	0	copy fasta	SLC19A1	chr21	45507565	45547440
SLC19A1_chr21_45507565_45547440	0/0	c0010	1776	1	1	0	0	0	0	copy fasta	SLC19A1	chr21	45507565	45547440
SLC19A1_chr21_45507565_45547440	0/0	c0011	1776	1	0	0	1	0	0	copy fasta	SLC19A1	chr21	45507565	45547440
SLC19A1_chr21_45507565_45547440	0/0	c0012	1776	1	1	0	0	0	0	copy fasta	SLC19A1	chr21	45507565	45547440
SLC19A1_chr21_45507565_45547440	0/0	c0013	1776	1	1	0	0	0	0	copy fasta	SLC19A1	chr21	45507565	45547440