JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SLC19A1_chr21_45507565_45547440	0/0	c0014	1776	1	0	1	0	0	0	copy fasta	SLC19A1	chr21	45507565	45547440
SLC19A2_chr1_169458909_169490944	1/1	c0001	1494	345	74	75	133	14	47	copy fasta	SLC19A2	chr1	169458909	169490944
SLC19A2_chr1_169458909_169490944	0/0	c0002	1494	17	0	0	17	0	0	copy fasta	SLC19A2	chr1	169458909	169490944
SLC19A2_chr1_169458909_169490944	0/0	c0003	1494	12	0	0	12	0	0	copy fasta	SLC19A2	chr1	169458909	169490944
SLC19A2_chr1_169458909_169490944	0/0	c0004	1494	9	9	0	0	0	0	copy fasta	SLC19A2	chr1	169458909	169490944
SLC19A2_chr1_169458909_169490944	0/0	c0005	1494	1	0	0	0	0	1	copy fasta	SLC19A2	chr1	169458909	169490944
SLC19A2_chr1_169458909_169490944	0/0	c0006	1494	1	1	0	0	0	0	copy fasta	SLC19A2	chr1	169458909	169490944
SLC19A2_chr1_169458909_169490944	0/0	c0007	1494	1	0	1	0	0	0	copy fasta	SLC19A2	chr1	169458909	169490944
SLC19A3_chr2_227678763_227723028	1/1	c0001	1491	336	47	74	153	16	44	copy fasta	SLC19A3	chr2	227678763	227723028
SLC19A3_chr2_227678763_227723028	0/0	c0002	1491	20	19	1	0	0	0	copy fasta	SLC19A3	chr2	227678763	227723028
SLC19A3_chr2_227678763_227723028	0/0	c0003	1491	17	13	4	0	0	0	copy fasta	SLC19A3	chr2	227678763	227723028
SLC19A3_chr2_227678763_227723028	0/0	c0004	1491	11	11	0	0	0	0	copy fasta	SLC19A3	chr2	227678763	227723028
SLC19A3_chr2_227678763_227723028	0/0	c0005	1491	2	2	0	0	0	0	copy fasta	SLC19A3	chr2	227678763	227723028
SLC19A3_chr2_227678763_227723028	0/0	c0006	1491	1	0	0	1	0	0	copy fasta	SLC19A3	chr2	227678763	227723028
SLC19A3_chr2_227678763_227723028	0/0	c0007	1491	1	0	1	0	0	0	copy fasta	SLC19A3	chr2	227678763	227723028
SLC19A3_chr2_227678763_227723028	0/0	c0008	1491	1	1	0	0	0	0	copy fasta	SLC19A3	chr2	227678763	227723028
SLC19A3_chr2_227678763_227723028	0/0	c0009	1491	1	0	0	1	0	0	copy fasta	SLC19A3	chr2	227678763	227723028
SLC19A3_chr2_227678763_227723028	0/0	c0010	1491	1	0	0	1	0	0	copy fasta	SLC19A3	chr2	227678763	227723028
SLC19A3_chr2_227678763_227723028	0/0	c0011	1491	1	1	0	0	0	0	copy fasta	SLC19A3	chr2	227678763	227723028
SLC1A1_chr9_4485468_4592469	0/0	c0001	1575	151	43	29	69	3	7	copy fasta	SLC1A1	chr9	4485468	4592469
SLC1A1_chr9_4485468_4592469	1/1	c0002	1575	117	29	17	47	5	17	copy fasta	SLC1A1	chr9	4485468	4592469
SLC1A1_chr9_4485468_4592469	0/0	c0003	1575	68	13	23	21	4	7	copy fasta	SLC1A1	chr9	4485468	4592469
SLC1A1_chr9_4485468_4592469	0/0	c0004	1575	32	2	3	19	3	5	copy fasta	SLC1A1	chr9	4485468	4592469
SLC1A1_chr9_4485468_4592469	0/0	c0005	1575	4	3	1	0	0	0	copy fasta	SLC1A1	chr9	4485468	4592469
SLC1A1_chr9_4485468_4592469	0/0	c0006	1575	3	0	2	0	1	0	copy fasta	SLC1A1	chr9	4485468	4592469
SLC1A1_chr9_4485468_4592469	0/0	c0007	1575	2	1	1	0	0	0	copy fasta	SLC1A1	chr9	4485468	4592469
SLC1A1_chr9_4485468_4592469	0/0	c0008	1575	2	2	0	0	0	0	copy fasta	SLC1A1	chr9	4485468	4592469
SLC1A1_chr9_4485468_4592469	0/0	c0009	1575	1	1	0	0	0	0	copy fasta	SLC1A1	chr9	4485468	4592469
SLC1A1_chr9_4485468_4592469	0/0	c0010	1575	1	0	0	1	0	0	copy fasta	SLC1A1	chr9	4485468	4592469
SLC1A1_chr9_4485468_4592469	0/0	c0011	1575	1	1	0	0	0	0	copy fasta	SLC1A1	chr9	4485468	4592469
SLC1A1_chr9_4485468_4592469	0/0	c0012	1575	1	0	0	1	0	0	copy fasta	SLC1A1	chr9	4485468	4592469
SLC1A1_chr9_4485468_4592469	0/0	c0013	1575	1	1	0	0	0	0	copy fasta	SLC1A1	chr9	4485468	4592469
SLC1A2_chr11_35246205_35424558	1/1	c0001	1725	202	47	37	96	3	17	copy fasta	SLC1A2	chr11	35246205	35424558
SLC1A2_chr11_35246205_35424558	0/0	c0002	1725	68	6	12	42	3	5	copy fasta	SLC1A2	chr11	35246205	35424558
SLC1A2_chr11_35246205_35424558	0/0	c0003	1725	19	19	0	0	0	0	copy fasta	SLC1A2	chr11	35246205	35424558
SLC1A2_chr11_35246205_35424558	0/0	c0004	1725	6	6	0	0	0	0	copy fasta	SLC1A2	chr11	35246205	35424558
SLC1A2_chr11_35246205_35424558	0/0	c0005	1725	3	3	0	0	0	0	copy fasta	SLC1A2	chr11	35246205	35424558
SLC1A2_chr11_35246205_35424558	0/0	c0006	1725	2	2	0	0	0	0	copy fasta	SLC1A2	chr11	35246205	35424558
SLC1A2_chr11_35246205_35424558	0/0	c0007	1725	1	1	0	0	0	0	copy fasta	SLC1A2	chr11	35246205	35424558
SLC1A2_chr11_35246205_35424558	0/0	c0008	1725	1	0	1	0	0	0	copy fasta	SLC1A2	chr11	35246205	35424558
SLC1A2_chr11_35246205_35424558	0/0	c0009	1725	1	0	0	0	0	1	copy fasta	SLC1A2	chr11	35246205	35424558
SLC1A2_chr11_35246205_35424558	0/0	c0010	1725	1	0	0	1	0	0	copy fasta	SLC1A2	chr11	35246205	35424558
SLC1A2_chr11_35246205_35424558	0/0	c0011	1725	1	0	0	0	0	1	copy fasta	SLC1A2	chr11	35246205	35424558
SLC1A2_chr11_35246205_35424558	0/0	c0012	1725	1	0	0	1	0	0	copy fasta	SLC1A2	chr11	35246205	35424558
SLC1A3_chr5_36601606_36693334	1/1	c0001	1629	360	84	65	157	14	38	copy fasta	SLC1A3	chr5	36601606	36693334
SLC1A3_chr5_36601606_36693334	0/0	c0002	1629	5	2	1	1	0	1	copy fasta	SLC1A3	chr5	36601606	36693334
SLC1A3_chr5_36601606_36693334	0/0	c0003	1629	5	0	0	5	0	0	copy fasta	SLC1A3	chr5	36601606	36693334
SLC1A3_chr5_36601606_36693334	0/0	c0004	1629	2	0	0	2	0	0	copy fasta	SLC1A3	chr5	36601606	36693334
SLC1A3_chr5_36601606_36693334	0/0	c0005	1629	1	0	0	1	0	0	copy fasta	SLC1A3	chr5	36601606	36693334
SLC1A3_chr5_36601606_36693334	0/0	c0006	1629	1	1	0	0	0	0	copy fasta	SLC1A3	chr5	36601606	36693334