JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SLC1A3_chr5_36601606_36693334	0/0	c0007	1629	1	0	0	1	0	0	copy fasta	SLC1A3	chr5	36601606	36693334
SLC1A3_chr5_36601606_36693334	0/0	c0008	1629	1	0	0	1	0	0	copy fasta	SLC1A3	chr5	36601606	36693334
SLC1A3_chr5_36601606_36693334	0/0	c0009	1629	1	0	0	1	0	0	copy fasta	SLC1A3	chr5	36601606	36693334
SLC1A3_chr5_36601606_36693334	0/0	c0010	1629	1	0	0	1	0	0	copy fasta	SLC1A3	chr5	36601606	36693334
SLC1A3_chr5_36601606_36693334	0/0	c0011	1629	1	1	0	0	0	0	copy fasta	SLC1A3	chr5	36601606	36693334
SLC1A3_chr5_36601606_36693334	0/0	c0012	1629	1	0	0	0	0	1	copy fasta	SLC1A3	chr5	36601606	36693334
SLC1A4_chr2_64984399_65028865	1/0	c0001	1599	227	50	36	110	7	23	copy fasta	SLC1A4	chr2	64984399	65028865
SLC1A4_chr2_64984399_65028865	0/0	c0002	1599	53	10	6	29	3	5	copy fasta	SLC1A4	chr2	64984399	65028865
SLC1A4_chr2_64984399_65028865	0/1	c0003	1599	30	2	3	18	0	6	copy fasta	SLC1A4	chr2	64984399	65028865
SLC1A4_chr2_64984399_65028865	0/0	c0004	1599	17	14	1	0	2	0	copy fasta	SLC1A4	chr2	64984399	65028865
SLC1A4_chr2_64984399_65028865	0/0	c0005	1599	14	9	1	1	1	2	copy fasta	SLC1A4	chr2	64984399	65028865
SLC1A4_chr2_64984399_65028865	0/0	c0006	1599	12	0	3	7	0	2	copy fasta	SLC1A4	chr2	64984399	65028865
SLC1A4_chr2_64984399_65028865	0/0	c0007	1599	9	0	1	5	0	3	copy fasta	SLC1A4	chr2	64984399	65028865
SLC1A4_chr2_64984399_65028865	0/0	c0008	1599	4	1	2	1	0	0	copy fasta	SLC1A4	chr2	64984399	65028865
SLC1A4_chr2_64984399_65028865	0/0	c0009	1599	3	0	2	0	0	1	copy fasta	SLC1A4	chr2	64984399	65028865
SLC1A4_chr2_64984399_65028865	0/0	c0010	1599	3	0	2	0	1	0	copy fasta	SLC1A4	chr2	64984399	65028865
SLC1A4_chr2_64984399_65028865	0/0	c0011	1599	3	3	0	0	0	0	copy fasta	SLC1A4	chr2	64984399	65028865
SLC1A4_chr2_64984399_65028865	0/0	c0012	1599	2	0	2	0	0	0	copy fasta	SLC1A4	chr2	64984399	65028865
SLC1A4_chr2_64984399_65028865	0/0	c0013	1599	1	0	0	0	0	1	copy fasta	SLC1A4	chr2	64984399	65028865
SLC1A4_chr2_64984399_65028865	0/0	c0014	1599	1	0	1	0	0	0	copy fasta	SLC1A4	chr2	64984399	65028865
SLC1A4_chr2_64984399_65028865	0/0	c0015	1599	1	0	0	0	1	0	copy fasta	SLC1A4	chr2	64984399	65028865
SLC1A4_chr2_64984399_65028865	0/0	c0016	1599	1	0	0	1	0	0	copy fasta	SLC1A4	chr2	64984399	65028865
SLC1A4_chr2_64984399_65028865	0/0	c0017	1599	1	0	0	1	0	0	copy fasta	SLC1A4	chr2	64984399	65028865
SLC1A4_chr2_64984399_65028865	0/0	c0018	1599	1	1	0	0	0	0	copy fasta	SLC1A4	chr2	64984399	65028865
SLC1A4_chr2_64984399_65028865	0/0	c0019	1599	1	1	0	0	0	0	copy fasta	SLC1A4	chr2	64984399	65028865
SLC1A4_chr2_64984399_65028865	0/0	c0020	1599	1	0	1	0	0	0	copy fasta	SLC1A4	chr2	64984399	65028865
SLC1A4_chr2_64984399_65028865	0/0	c0021	1599	1	0	0	0	0	1	copy fasta	SLC1A4	chr2	64984399	65028865
SLC1A4_chr2_64984399_65028865	0/0	c0022	1599	1	1	0	0	0	0	copy fasta	SLC1A4	chr2	64984399	65028865
SLC1A4_chr2_64984399_65028865	0/0	c0023	1599	1	0	0	0	0	1	copy fasta	SLC1A4	chr2	64984399	65028865
SLC1A4_chr2_64984399_65028865	0/0	c0024	1599	1	0	0	1	0	0	copy fasta	SLC1A4	chr2	64984399	65028865
SLC1A4_chr2_64984399_65028865	0/0	c0025	1599	1	1	0	0	0	0	copy fasta	SLC1A4	chr2	64984399	65028865
SLC1A4_chr2_64984399_65028865	0/0	c0026	1599	1	0	0	0	1	0	copy fasta	SLC1A4	chr2	64984399	65028865
SLC1A4_chr2_64984399_65028865	0/0	c0027	1599	1	0	0	0	0	1	copy fasta	SLC1A4	chr2	64984399	65028865
SLC1A4_chr2_64984399_65028865	0/0	c0028	1599	1	0	1	0	0	0	copy fasta	SLC1A4	chr2	64984399	65028865
SLC1A4_chr2_64984399_65028865	0/0	c0029	1599	1	1	0	0	0	0	copy fasta	SLC1A4	chr2	64984399	65028865
SLC1A5_chr19_46769883_46793594	1/0	c0001	1626	146	53	18	53	2	19	copy fasta	SLC1A5	chr19	46769883	46793594
SLC1A5_chr19_46769883_46793594	0/0	c0002	1626	128	25	31	50	3	19	copy fasta	SLC1A5	chr19	46769883	46793594
SLC1A5_chr19_46769883_46793594	0/0	c0003	1626	84	1	12	67	0	4	copy fasta	SLC1A5	chr19	46769883	46793594
SLC1A5_chr19_46769883_46793594	0/1	c0004	1626	23	3	8	0	7	4	copy fasta	SLC1A5	chr19	46769883	46793594
SLC1A5_chr19_46769883_46793594	0/0	c0005	1626	20	0	7	8	2	3	copy fasta	SLC1A5	chr19	46769883	46793594
SLC1A5_chr19_46769883_46793594	0/0	c0006	1626	8	0	0	8	0	0	copy fasta	SLC1A5	chr19	46769883	46793594
SLC1A5_chr19_46769883_46793594	0/0	c0007	1626	4	4	0	0	0	0	copy fasta	SLC1A5	chr19	46769883	46793594
SLC1A5_chr19_46769883_46793594	0/0	c0008	1626	3	3	0	0	0	0	copy fasta	SLC1A5	chr19	46769883	46793594
SLC1A5_chr19_46769883_46793594	0/0	c0009	1626	2	2	0	0	0	0	copy fasta	SLC1A5	chr19	46769883	46793594
SLC1A5_chr19_46769883_46793594	0/0	c0010	1626	2	2	0	0	0	0	copy fasta	SLC1A5	chr19	46769883	46793594
SLC1A5_chr19_46769883_46793594	0/0	c0011	1626	2	2	0	0	0	0	copy fasta	SLC1A5	chr19	46769883	46793594
SLC1A5_chr19_46769883_46793594	0/0	c0012	1626	2	0	0	2	0	0	copy fasta	SLC1A5	chr19	46769883	46793594
SLC1A5_chr19_46769883_46793594	0/0	c0013	1626	1	1	0	0	0	0	copy fasta	SLC1A5	chr19	46769883	46793594
SLC1A5_chr19_46769883_46793594	0/0	c0014	1626	1	0	0	1	0	0	copy fasta	SLC1A5	chr19	46769883	46793594
SLC1A5_chr19_46769883_46793594	0/0	c0015	1626	1	0	0	0	0	1	copy fasta	SLC1A5	chr19	46769883	46793594