JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SLC1A5_chr19_46769883_46793594	0/0	c0016	1626	1	0	0	1	0	0	copy fasta	SLC1A5	chr19	46769883	46793594
SLC1A6_chr19_14945033_14984864	1/0	c0001	1695	167	43	35	59	6	23	copy fasta	SLC1A6	chr19	14945033	14984864
SLC1A6_chr19_14945033_14984864	0/0	c0002	1695	115	35	12	62	3	3	copy fasta	SLC1A6	chr19	14945033	14984864
SLC1A6_chr19_14945033_14984864	0/1	c0003	1695	110	11	23	51	7	17	copy fasta	SLC1A6	chr19	14945033	14984864
SLC1A6_chr19_14945033_14984864	0/0	c0004	1695	5	3	0	2	0	0	copy fasta	SLC1A6	chr19	14945033	14984864
SLC1A6_chr19_14945033_14984864	0/0	c0005	1695	3	0	3	0	0	0	copy fasta	SLC1A6	chr19	14945033	14984864
SLC1A6_chr19_14945033_14984864	0/0	c0006	1695	2	0	0	2	0	0	copy fasta	SLC1A6	chr19	14945033	14984864
SLC1A6_chr19_14945033_14984864	0/0	c0007	1695	1	0	1	0	0	0	copy fasta	SLC1A6	chr19	14945033	14984864
SLC1A6_chr19_14945033_14984864	0/0	c0008	1695	1	1	0	0	0	0	copy fasta	SLC1A6	chr19	14945033	14984864
SLC1A6_chr19_14945033_14984864	0/0	c0009	1695	1	0	0	0	0	1	copy fasta	SLC1A6	chr19	14945033	14984864
SLC1A6_chr19_14945033_14984864	0/0	c0010	1695	1	0	0	1	0	0	copy fasta	SLC1A6	chr19	14945033	14984864
SLC1A6_chr19_14945033_14984864	0/0	c0011	1695	1	0	0	1	0	0	copy fasta	SLC1A6	chr19	14945033	14984864
SLC1A6_chr19_14945033_14984864	0/0	c0012	1695	1	1	0	0	0	0	copy fasta	SLC1A6	chr19	14945033	14984864
SLC1A7_chr1_53082183_53147638	0/0	c0001	1683	88	9	24	32	6	17	copy fasta	SLC1A7	chr1	53082183	53147638
SLC1A7_chr1_53082183_53147638	0/1	c0002	1683	83	31	7	37	2	5	copy fasta	SLC1A7	chr1	53082183	53147638
SLC1A7_chr1_53082183_53147638	0/0	c0003	1683	55	8	5	32	1	9	copy fasta	SLC1A7	chr1	53082183	53147638
SLC1A7_chr1_53082183_53147638	0/0	c0004	1683	37	0	8	26	3	0	copy fasta	SLC1A7	chr1	53082183	53147638
SLC1A7_chr1_53082183_53147638	0/0	c0005	1683	23	0	9	13	0	1	copy fasta	SLC1A7	chr1	53082183	53147638
SLC1A7_chr1_53082183_53147638	0/0	c0006	1683	21	0	0	20	0	1	copy fasta	SLC1A7	chr1	53082183	53147638
SLC1A7_chr1_53082183_53147638	0/0	c0007	1683	21	6	4	0	1	10	copy fasta	SLC1A7	chr1	53082183	53147638
SLC1A7_chr1_53082183_53147638	1/0	c0008	1683	19	18	0	0	0	0	copy fasta	SLC1A7	chr1	53082183	53147638
SLC1A7_chr1_53082183_53147638	0/0	c0009	1683	13	4	5	4	0	0	copy fasta	SLC1A7	chr1	53082183	53147638
SLC1A7_chr1_53082183_53147638	0/0	c0010	1683	6	6	0	0	0	0	copy fasta	SLC1A7	chr1	53082183	53147638
SLC1A7_chr1_53082183_53147638	0/0	c0011	1683	5	1	0	4	0	0	copy fasta	SLC1A7	chr1	53082183	53147638
SLC1A7_chr1_53082183_53147638	0/0	c0012	1683	4	0	0	4	0	0	copy fasta	SLC1A7	chr1	53082183	53147638
SLC1A7_chr1_53082183_53147638	0/0	c0013	1683	3	0	3	0	0	0	copy fasta	SLC1A7	chr1	53082183	53147638
SLC1A7_chr1_53082183_53147638	0/0	c0014	1683	3	3	0	0	0	0	copy fasta	SLC1A7	chr1	53082183	53147638
SLC1A7_chr1_53082183_53147638	0/0	c0015	1683	3	0	3	0	0	0	copy fasta	SLC1A7	chr1	53082183	53147638
SLC1A7_chr1_53082183_53147638	0/0	c0016	1683	2	2	0	0	0	0	copy fasta	SLC1A7	chr1	53082183	53147638
SLC1A7_chr1_53082183_53147638	0/0	c0017	1683	1	0	0	1	0	0	copy fasta	SLC1A7	chr1	53082183	53147638
SLC1A7_chr1_53082183_53147638	0/0	c0018	1683	1	0	0	1	0	0	copy fasta	SLC1A7	chr1	53082183	53147638
SLC1A7_chr1_53082183_53147638	0/0	c0019	1683	1	0	0	1	0	0	copy fasta	SLC1A7	chr1	53082183	53147638
SLC1A7_chr1_53082183_53147638	0/0	c0020	1683	1	0	0	1	0	0	copy fasta	SLC1A7	chr1	53082183	53147638
SLC1A7_chr1_53082183_53147638	0/0	c0021	1683	1	1	0	0	0	0	copy fasta	SLC1A7	chr1	53082183	53147638
SLC1A7_chr1_53082183_53147638	0/0	c0022	1683	1	0	0	0	1	0	copy fasta	SLC1A7	chr1	53082183	53147638
SLC1A7_chr1_53082183_53147638	0/0	c0023	1683	1	1	0	0	0	0	copy fasta	SLC1A7	chr1	53082183	53147638
SLC1A7_chr1_53082183_53147638	0/0	c0024	1683	1	0	1	0	0	0	copy fasta	SLC1A7	chr1	53082183	53147638
SLC1A7_chr1_53082183_53147638	0/0	c0025	1683	1	0	0	1	0	0	copy fasta	SLC1A7	chr1	53082183	53147638
SLC1A7_chr1_53082183_53147638	0/0	c0026	1683	1	0	1	0	0	0	copy fasta	SLC1A7	chr1	53082183	53147638
SLC1A7_chr1_53082183_53147638	0/0	c0027	1683	1	0	0	0	0	1	copy fasta	SLC1A7	chr1	53082183	53147638
SLC1A7_chr1_53082183_53147638	0/0	c0028	1683	1	1	0	0	0	0	copy fasta	SLC1A7	chr1	53082183	53147638
SLC1A7_chr1_53082183_53147638	0/0	c0029	1683	1	1	0	0	0	0	copy fasta	SLC1A7	chr1	53082183	53147638
SLC1A7_chr1_53082183_53147638	0/0	c0030	1683	1	0	0	1	0	0	copy fasta	SLC1A7	chr1	53082183	53147638
SLC20A1_chr2_112640939_112668825	1/0	c0001	2040	224	70	39	92	8	14	copy fasta	SLC20A1	chr2	112640939	112668825
SLC20A1_chr2_112640939_112668825	0/1	c0002	2040	101	13	21	42	8	16	copy fasta	SLC20A1	chr2	112640939	112668825
SLC20A1_chr2_112640939_112668825	0/0	c0003	2040	5	5	0	0	0	0	copy fasta	SLC20A1	chr2	112640939	112668825
SLC20A1_chr2_112640939_112668825	0/0	c0004	2040	1	0	0	0	0	1	copy fasta	SLC20A1	chr2	112640939	112668825
SLC20A1_chr2_112640939_112668825	0/0	c0005	2040	1	0	0	0	0	1	copy fasta	SLC20A1	chr2	112640939	112668825
SLC20A1_chr2_112640939_112668825	0/0	c0006	2040	1	1	0	0	0	0	copy fasta	SLC20A1	chr2	112640939	112668825
SLC20A1_chr2_112640939_112668825	0/0	c0007	2040	1	1	0	0	0	0	copy fasta	SLC20A1	chr2	112640939	112668825