JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SLC20A2_chr8_42411475_42506231	1/1	c0001	1959	186	67	28	60	5	24	copy fasta	SLC20A2	chr8	42411475	42506231
SLC20A2_chr8_42411475_42506231	0/0	c0002	1959	15	13	2	0	0	0	copy fasta	SLC20A2	chr8	42411475	42506231
SLC20A2_chr8_42411475_42506231	0/0	c0003	1959	11	0	0	11	0	0	copy fasta	SLC20A2	chr8	42411475	42506231
SLC20A2_chr8_42411475_42506231	0/0	c0004	1959	8	8	0	0	0	0	copy fasta	SLC20A2	chr8	42411475	42506231
SLC20A2_chr8_42411475_42506231	0/0	c0005	1959	5	0	0	5	0	0	copy fasta	SLC20A2	chr8	42411475	42506231
SLC20A2_chr8_42411475_42506231	0/0	c0006	1959	3	0	0	3	0	0	copy fasta	SLC20A2	chr8	42411475	42506231
SLC20A2_chr8_42411475_42506231	0/0	c0007	1959	2	0	1	0	1	0	copy fasta	SLC20A2	chr8	42411475	42506231
SLC20A2_chr8_42411475_42506231	0/0	c0008	1959	2	2	0	0	0	0	copy fasta	SLC20A2	chr8	42411475	42506231
SLC20A2_chr8_42411475_42506231	0/0	c0009	1959	1	1	0	0	0	0	copy fasta	SLC20A2	chr8	42411475	42506231
SLC20A2_chr8_42411475_42506231	0/0	c0010	1959	1	0	0	0	0	1	copy fasta	SLC20A2	chr8	42411475	42506231
SLC20A2_chr8_42411475_42506231	0/0	c0011	1959	1	0	0	0	0	1	copy fasta	SLC20A2	chr8	42411475	42506231
SLC20A2_chr8_42411475_42506231	0/0	c0012	1959	1	0	0	1	0	0	copy fasta	SLC20A2	chr8	42411475	42506231
SLC20A2_chr8_42411475_42506231	0/0	c0013	1959	1	1	0	0	0	0	copy fasta	SLC20A2	chr8	42411475	42506231
SLC20A2_chr8_42411475_42506231	0/0	c0014	1959	1	0	1	0	0	0	copy fasta	SLC20A2	chr8	42411475	42506231
SLC22A10_chr11_63284903_63316783	1/0	c0001	1626	174	21	21	107	7	17	copy fasta	SLC22A10	chr11	63284903	63316783
SLC22A10_chr11_63284903_63316783	0/1	c0002	1626	156	24	36	65	10	20	copy fasta	SLC22A10	chr11	63284903	63316783
SLC22A10_chr11_63284903_63316783	0/0	c0003	1626	29	22	3	0	1	3	copy fasta	SLC22A10	chr11	63284903	63316783
SLC22A10_chr11_63284903_63316783	0/0	c0004	1626	13	13	0	0	0	0	copy fasta	SLC22A10	chr11	63284903	63316783
SLC22A10_chr11_63284903_63316783	0/0	c0005	1626	6	0	0	6	0	0	copy fasta	SLC22A10	chr11	63284903	63316783
SLC22A10_chr11_63284903_63316783	0/0	c0006	1626	5	5	0	0	0	0	copy fasta	SLC22A10	chr11	63284903	63316783
SLC22A10_chr11_63284903_63316783	0/0	c0007	1626	3	3	0	0	0	0	copy fasta	SLC22A10	chr11	63284903	63316783
SLC22A10_chr11_63284903_63316783	0/0	c0008	1626	3	1	2	0	0	0	copy fasta	SLC22A10	chr11	63284903	63316783
SLC22A10_chr11_63284903_63316783	0/0	c0009	1626	2	0	0	2	0	0	copy fasta	SLC22A10	chr11	63284903	63316783
SLC22A10_chr11_63284903_63316783	0/0	c0010	1626	2	0	0	2	0	0	copy fasta	SLC22A10	chr11	63284903	63316783
SLC22A10_chr11_63284903_63316783	0/0	c0011	1626	1	0	1	0	0	0	copy fasta	SLC22A10	chr11	63284903	63316783
SLC22A10_chr11_63284903_63316783	0/0	c0012	1626	1	0	0	1	0	0	copy fasta	SLC22A10	chr11	63284903	63316783
SLC22A10_chr11_63284903_63316783	0/0	c0013	1626	1	0	1	0	0	0	copy fasta	SLC22A10	chr11	63284903	63316783
SLC22A10_chr11_63284903_63316783	0/0	c0014	1626	1	0	0	0	0	1	copy fasta	SLC22A10	chr11	63284903	63316783
SLC22A10_chr11_63284903_63316783	0/0	c0015	1626	1	1	0	0	0	0	copy fasta	SLC22A10	chr11	63284903	63316783
SLC22A10_chr11_63284903_63316783	0/0	c0016	1626	1	1	0	0	0	0	copy fasta	SLC22A10	chr11	63284903	63316783
SLC22A10_chr11_63284903_63316783	0/0	c0017	1626	1	0	0	0	0	1	copy fasta	SLC22A10	chr11	63284903	63316783
SLC22A10_chr11_63284903_63316783	0/0	c0018	1626	1	1	0	0	0	0	copy fasta	SLC22A10	chr11	63284903	63316783
SLC22A10_chr11_63284903_63316783	0/0	c0019	1626	1	0	0	1	0	0	copy fasta	SLC22A10	chr11	63284903	63316783
SLC22A11_chr11_64550941_64577875	1/0	c0001	1653	367	85	67	167	14	33	copy fasta	SLC22A11	chr11	64550941	64577875
SLC22A11_chr11_64550941_64577875	0/0	c0002	1653	2	2	0	0	0	0	copy fasta	SLC22A11	chr11	64550941	64577875
SLC22A11_chr11_64550941_64577875	0/0	c0003	1653	2	0	1	1	0	0	copy fasta	SLC22A11	chr11	64550941	64577875
SLC22A11_chr11_64550941_64577875	0/0	c0004	1653	2	1	1	0	0	0	copy fasta	SLC22A11	chr11	64550941	64577875
SLC22A11_chr11_64550941_64577875	0/0	c0005	1653	2	0	0	2	0	0	copy fasta	SLC22A11	chr11	64550941	64577875
SLC22A11_chr11_64550941_64577875	0/0	c0006	1653	2	2	0	0	0	0	copy fasta	SLC22A11	chr11	64550941	64577875
SLC22A11_chr11_64550941_64577875	0/0	c0007	1653	1	0	1	0	0	0	copy fasta	SLC22A11	chr11	64550941	64577875
SLC22A11_chr11_64550941_64577875	0/0	c0008	1653	1	0	0	1	0	0	copy fasta	SLC22A11	chr11	64550941	64577875
SLC22A11_chr11_64550941_64577875	0/0	c0009	1653	1	0	1	0	0	0	copy fasta	SLC22A11	chr11	64550941	64577875
SLC22A11_chr11_64550941_64577875	0/0	c0010	1653	1	0	0	1	0	0	copy fasta	SLC22A11	chr11	64550941	64577875
SLC22A11_chr11_64550941_64577875	0/0	c0011	1653	1	0	0	0	0	1	copy fasta	SLC22A11	chr11	64550941	64577875
SLC22A11_chr11_64550941_64577875	0/0	c0012	1653	1	0	1	0	0	0	copy fasta	SLC22A11	chr11	64550941	64577875
SLC22A12_chr11_64586220_64607344	0/0	c0001	1662	139	61	19	47	3	9	copy fasta	SLC22A12	chr11	64586220	64607344
SLC22A12_chr11_64586220_64607344	0/1	c0002	1662	101	7	29	31	12	21	copy fasta	SLC22A12	chr11	64586220	64607344
SLC22A12_chr11_64586220_64607344	0/0	c0003	1662	78	12	12	43	3	8	copy fasta	SLC22A12	chr11	64586220	64607344
SLC22A12_chr11_64586220_64607344	0/0	c0004	1662	45	1	1	43	0	0	copy fasta	SLC22A12	chr11	64586220	64607344
SLC22A12_chr11_64586220_64607344	1/0	c0005	1662	10	8	1	0	0	0	copy fasta	SLC22A12	chr11	64586220	64607344