JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SLC22A12_chr11_64586220_64607344	0/0	c0006	1662	5	0	0	5	0	0	copy fasta	SLC22A12	chr11	64586220	64607344
SLC22A12_chr11_64586220_64607344	0/0	c0007	1662	3	0	0	3	0	0	copy fasta	SLC22A12	chr11	64586220	64607344
SLC22A12_chr11_64586220_64607344	0/0	c0008	1662	2	2	0	0	0	0	copy fasta	SLC22A12	chr11	64586220	64607344
SLC22A12_chr11_64586220_64607344	0/0	c0009	1662	2	2	0	0	0	0	copy fasta	SLC22A12	chr11	64586220	64607344
SLC22A12_chr11_64586220_64607344	0/0	c0010	1662	1	0	0	1	0	0	copy fasta	SLC22A12	chr11	64586220	64607344
SLC22A12_chr11_64586220_64607344	0/0	c0011	1662	1	0	0	1	0	0	copy fasta	SLC22A12	chr11	64586220	64607344
SLC22A12_chr11_64586220_64607344	0/0	c0012	1662	1	0	0	1	0	0	copy fasta	SLC22A12	chr11	64586220	64607344
SLC22A12_chr11_64586220_64607344	0/0	c0013	1662	1	0	0	1	0	0	copy fasta	SLC22A12	chr11	64586220	64607344
SLC22A12_chr11_64586220_64607344	0/0	c0014	1662	1	1	0	0	0	0	copy fasta	SLC22A12	chr11	64586220	64607344
SLC22A13_chr3_38260812_38283757	1/1	c0001	1656	272	51	61	119	10	29	copy fasta	SLC22A13	chr3	38260812	38283757
SLC22A13_chr3_38260812_38283757	0/0	c0002	1656	40	21	12	4	2	1	copy fasta	SLC22A13	chr3	38260812	38283757
SLC22A13_chr3_38260812_38283757	0/0	c0003	1656	6	6	0	0	0	0	copy fasta	SLC22A13	chr3	38260812	38283757
SLC22A13_chr3_38260812_38283757	0/0	c0004	1656	6	0	0	6	0	0	copy fasta	SLC22A13	chr3	38260812	38283757
SLC22A13_chr3_38260812_38283757	0/0	c0005	1656	4	4	0	0	0	0	copy fasta	SLC22A13	chr3	38260812	38283757
SLC22A13_chr3_38260812_38283757	0/0	c0006	1656	3	3	0	0	0	0	copy fasta	SLC22A13	chr3	38260812	38283757
SLC22A13_chr3_38260812_38283757	0/0	c0007	1656	3	3	0	0	0	0	copy fasta	SLC22A13	chr3	38260812	38283757
SLC22A13_chr3_38260812_38283757	0/0	c0008	1656	2	0	0	2	0	0	copy fasta	SLC22A13	chr3	38260812	38283757
SLC22A13_chr3_38260812_38283757	0/0	c0009	1656	2	0	0	0	0	2	copy fasta	SLC22A13	chr3	38260812	38283757
SLC22A13_chr3_38260812_38283757	0/0	c0010	1656	2	0	0	0	2	0	copy fasta	SLC22A13	chr3	38260812	38283757
SLC22A13_chr3_38260812_38283757	0/0	c0011	1656	1	1	0	0	0	0	copy fasta	SLC22A13	chr3	38260812	38283757
SLC22A13_chr3_38260812_38283757	0/0	c0012	1656	1	0	0	0	0	1	copy fasta	SLC22A13	chr3	38260812	38283757
SLC22A13_chr3_38260812_38283757	0/0	c0013	1656	1	0	0	0	0	1	copy fasta	SLC22A13	chr3	38260812	38283757
SLC22A13_chr3_38260812_38283757	0/0	c0014	1656	1	0	1	0	0	0	copy fasta	SLC22A13	chr3	38260812	38283757
SLC22A13_chr3_38260812_38283757	0/0	c0015	1656	1	1	0	0	0	0	copy fasta	SLC22A13	chr3	38260812	38283757
SLC22A13_chr3_38260812_38283757	0/0	c0016	1656	1	0	0	1	0	0	copy fasta	SLC22A13	chr3	38260812	38283757
SLC22A13_chr3_38260812_38283757	0/0	c0017	1656	1	0	0	1	0	0	copy fasta	SLC22A13	chr3	38260812	38283757
SLC22A13_chr3_38260812_38283757	0/0	c0018	1656	1	0	0	1	0	0	copy fasta	SLC22A13	chr3	38260812	38283757
SLC22A13_chr3_38260812_38283757	0/0	c0019	1656	1	0	0	1	0	0	copy fasta	SLC22A13	chr3	38260812	38283757
SLC22A13_chr3_38260812_38283757	0/0	c0020	1656	1	0	0	1	0	0	copy fasta	SLC22A13	chr3	38260812	38283757
SLC22A14_chr3_38277294_38323575	0/0	c0001	1785	180	27	37	80	9	27	copy fasta	SLC22A14	chr3	38277294	38323575
SLC22A14_chr3_38277294_38323575	0/0	c0002	1785	67	12	19	31	1	4	copy fasta	SLC22A14	chr3	38277294	38323575
SLC22A14_chr3_38277294_38323575	0/0	c0003	1785	27	1	4	22	0	0	copy fasta	SLC22A14	chr3	38277294	38323575
SLC22A14_chr3_38277294_38323575	0/0	c0004	1785	18	5	2	9	0	2	copy fasta	SLC22A14	chr3	38277294	38323575
SLC22A14_chr3_38277294_38323575	0/0	c0005	1785	15	0	2	13	0	0	copy fasta	SLC22A14	chr3	38277294	38323575
SLC22A14_chr3_38277294_38323575	1/0	c0006	1785	12	5	3	2	0	1	copy fasta	SLC22A14	chr3	38277294	38323575
SLC22A14_chr3_38277294_38323575	0/1	c0007	1785	10	6	2	1	0	0	copy fasta	SLC22A14	chr3	38277294	38323575
SLC22A14_chr3_38277294_38323575	0/0	c0008	1785	6	0	1	5	0	0	copy fasta	SLC22A14	chr3	38277294	38323575
SLC22A14_chr3_38277294_38323575	0/0	c0009	1785	6	3	0	2	0	1	copy fasta	SLC22A14	chr3	38277294	38323575
SLC22A14_chr3_38277294_38323575	0/0	c0010	1785	5	0	5	0	0	0	copy fasta	SLC22A14	chr3	38277294	38323575
SLC22A14_chr3_38277294_38323575	0/0	c0011	1785	5	5	0	0	0	0	copy fasta	SLC22A14	chr3	38277294	38323575
SLC22A14_chr3_38277294_38323575	0/0	c0012	1785	4	0	0	4	0	0	copy fasta	SLC22A14	chr3	38277294	38323575
SLC22A14_chr3_38277294_38323575	0/0	c0013	1785	4	4	0	0	0	0	copy fasta	SLC22A14	chr3	38277294	38323575
SLC22A14_chr3_38277294_38323575	0/0	c0014	1785	4	4	0	0	0	0	copy fasta	SLC22A14	chr3	38277294	38323575
SLC22A14_chr3_38277294_38323575	0/0	c0015	1781	4	0	1	0	3	0	copy fasta	SLC22A14	chr3	38277294	38323575
SLC22A14_chr3_38277294_38323575	0/0	c0016	1785	3	0	1	2	0	0	copy fasta	SLC22A14	chr3	38277294	38323575
SLC22A14_chr3_38277294_38323575	0/0	c0017	1785	3	3	0	0	0	0	copy fasta	SLC22A14	chr3	38277294	38323575
SLC22A14_chr3_38277294_38323575	0/0	c0018	1785	2	2	0	0	0	0	copy fasta	SLC22A14	chr3	38277294	38323575
SLC22A14_chr3_38277294_38323575	0/0	c0019	1785	2	2	0	0	0	0	copy fasta	SLC22A14	chr3	38277294	38323575
SLC22A14_chr3_38277294_38323575	0/0	c0020	1785	2	0	0	1	0	1	copy fasta	SLC22A14	chr3	38277294	38323575
SLC22A14_chr3_38277294_38323575	0/0	c0021	1785	2	0	1	1	0	0	copy fasta	SLC22A14	chr3	38277294	38323575