JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SLC22A14_chr3_38277294_38323575	0/0	c0022	1785	2	0	2	0	0	0	copy fasta	SLC22A14	chr3	38277294	38323575
SLC22A14_chr3_38277294_38323575	0/0	c0023	1785	2	0	0	2	0	0	copy fasta	SLC22A14	chr3	38277294	38323575
SLC22A14_chr3_38277294_38323575	0/0	c0024	1785	2	1	1	0	0	0	copy fasta	SLC22A14	chr3	38277294	38323575
SLC22A14_chr3_38277294_38323575	0/0	c0025	1769	1	0	0	1	0	0	copy fasta	SLC22A14	chr3	38277294	38323575
SLC22A14_chr3_38277294_38323575	0/0	c0026	1785	1	0	0	1	0	0	copy fasta	SLC22A14	chr3	38277294	38323575
SLC22A14_chr3_38277294_38323575	0/0	c0027	1785	1	0	1	0	0	0	copy fasta	SLC22A14	chr3	38277294	38323575
SLC22A14_chr3_38277294_38323575	0/0	c0028	1785	1	1	0	0	0	0	copy fasta	SLC22A14	chr3	38277294	38323575
SLC22A14_chr3_38277294_38323575	0/0	c0029	1785	1	1	0	0	0	0	copy fasta	SLC22A14	chr3	38277294	38323575
SLC22A14_chr3_38277294_38323575	0/0	c0030	1785	1	1	0	0	0	0	copy fasta	SLC22A14	chr3	38277294	38323575
SLC22A14_chr3_38277294_38323575	0/0	c0031	1781	1	0	0	0	0	1	copy fasta	SLC22A14	chr3	38277294	38323575
SLC22A14_chr3_38277294_38323575	0/0	c0032	1785	1	1	0	0	0	0	copy fasta	SLC22A14	chr3	38277294	38323575
SLC22A14_chr3_38277294_38323575	0/0	c0033	1785	1	1	0	0	0	0	copy fasta	SLC22A14	chr3	38277294	38323575
SLC22A14_chr3_38277294_38323575	0/0	c0034	1785	1	1	0	0	0	0	copy fasta	SLC22A14	chr3	38277294	38323575
SLC22A14_chr3_38277294_38323575	0/0	c0035	1785	1	1	0	0	0	0	copy fasta	SLC22A14	chr3	38277294	38323575
SLC22A14_chr3_38277294_38323575	0/0	c0036	1785	1	0	0	0	1	0	copy fasta	SLC22A14	chr3	38277294	38323575
SLC22A14_chr3_38277294_38323575	0/0	c0037	1785	1	0	0	1	0	0	copy fasta	SLC22A14	chr3	38277294	38323575
SLC22A14_chr3_38277294_38323575	0/0	c0038	1785	1	1	0	0	0	0	copy fasta	SLC22A14	chr3	38277294	38323575
SLC22A14_chr3_38277294_38323575	0/0	c0039	1785	1	0	0	0	0	1	copy fasta	SLC22A14	chr3	38277294	38323575
SLC22A14_chr3_38277294_38323575	0/0	c0040	1785	1	0	0	1	0	0	copy fasta	SLC22A14	chr3	38277294	38323575
SLC22A14_chr3_38277294_38323575	0/0	c0041	1785	1	0	0	1	0	0	copy fasta	SLC22A14	chr3	38277294	38323575
SLC22A14_chr3_38277294_38323575	0/0	c0042	1785	1	1	0	0	0	0	copy fasta	SLC22A14	chr3	38277294	38323575
SLC22A14_chr3_38277294_38323575	0/0	c0043	1785	1	1	0	0	0	0	copy fasta	SLC22A14	chr3	38277294	38323575
SLC22A15_chr1_115971513_116075054	0/0	c0001	1644	115	35	18	48	4	10	copy fasta	SLC22A15	chr1	115971513	116075054
SLC22A15_chr1_115971513_116075054	0/1	c0002	1644	67	2	22	28	3	11	copy fasta	SLC22A15	chr1	115971513	116075054
SLC22A15_chr1_115971513_116075054	0/0	c0003	1644	45	5	4	31	1	4	copy fasta	SLC22A15	chr1	115971513	116075054
SLC22A15_chr1_115971513_116075054	0/0	c0004	1644	27	0	13	14	0	0	copy fasta	SLC22A15	chr1	115971513	116075054
SLC22A15_chr1_115971513_116075054	0/0	c0005	1644	15	14	1	0	0	0	copy fasta	SLC22A15	chr1	115971513	116075054
SLC22A15_chr1_115971513_116075054	0/0	c0006	1644	11	11	0	0	0	0	copy fasta	SLC22A15	chr1	115971513	116075054
SLC22A15_chr1_115971513_116075054	1/0	c0007	1644	10	8	1	0	0	0	copy fasta	SLC22A15	chr1	115971513	116075054
SLC22A15_chr1_115971513_116075054	0/0	c0008	1644	5	0	0	4	0	1	copy fasta	SLC22A15	chr1	115971513	116075054
SLC22A15_chr1_115971513_116075054	0/0	c0009	1644	3	0	2	0	1	0	copy fasta	SLC22A15	chr1	115971513	116075054
SLC22A15_chr1_115971513_116075054	0/0	c0010	1644	2	0	1	0	1	0	copy fasta	SLC22A15	chr1	115971513	116075054
SLC22A15_chr1_115971513_116075054	0/0	c0011	1644	1	1	0	0	0	0	copy fasta	SLC22A15	chr1	115971513	116075054
SLC22A15_chr1_115971513_116075054	0/0	c0012	1644	1	1	0	0	0	0	copy fasta	SLC22A15	chr1	115971513	116075054
SLC22A15_chr1_115971513_116075054	0/0	c0013	1644	1	1	0	0	0	0	copy fasta	SLC22A15	chr1	115971513	116075054
SLC22A15_chr1_115971513_116075054	0/0	c0014	1644	1	0	0	1	0	0	copy fasta	SLC22A15	chr1	115971513	116075054
SLC22A15_chr1_115971513_116075054	0/0	c0015	1644	1	1	0	0	0	0	copy fasta	SLC22A15	chr1	115971513	116075054
SLC22A15_chr1_115971513_116075054	0/0	c0016	1644	1	1	0	0	0	0	copy fasta	SLC22A15	chr1	115971513	116075054
SLC22A15_chr1_115971513_116075054	0/0	c0017	1644	1	0	0	1	0	0	copy fasta	SLC22A15	chr1	115971513	116075054
SLC22A15_chr1_115971513_116075054	0/0	c0018	1644	1	0	0	1	0	0	copy fasta	SLC22A15	chr1	115971513	116075054
SLC22A16_chr6_110419687_110481613	1/1	c0001	1734	206	48	37	95	8	16	copy fasta	SLC22A16	chr6	110419687	110481613
SLC22A16_chr6_110419687_110481613	0/0	c0002	1734	102	19	9	60	3	11	copy fasta	SLC22A16	chr6	110419687	110481613
SLC22A16_chr6_110419687_110481613	0/0	c0003	1734	40	6	13	18	2	1	copy fasta	SLC22A16	chr6	110419687	110481613
SLC22A16_chr6_110419687_110481613	0/0	c0004	1734	14	1	6	0	2	5	copy fasta	SLC22A16	chr6	110419687	110481613
SLC22A16_chr6_110419687_110481613	0/0	c0005	1734	6	1	3	0	0	2	copy fasta	SLC22A16	chr6	110419687	110481613
SLC22A16_chr6_110419687_110481613	0/0	c0006	1734	5	5	0	0	0	0	copy fasta	SLC22A16	chr6	110419687	110481613
SLC22A16_chr6_110419687_110481613	0/0	c0007	1734	4	0	0	4	0	0	copy fasta	SLC22A16	chr6	110419687	110481613
SLC22A16_chr6_110419687_110481613	0/0	c0008	1734	4	0	2	0	1	1	copy fasta	SLC22A16	chr6	110419687	110481613
SLC22A16_chr6_110419687_110481613	0/0	c0009	1734	4	0	4	0	0	0	copy fasta	SLC22A16	chr6	110419687	110481613
SLC22A16_chr6_110419687_110481613	0/0	c0010	1734	4	4	0	0	0	0	copy fasta	SLC22A16	chr6	110419687	110481613