JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ATP2B4_chr1_203621832_203749081	0/0	c0009	3618	2	1	1	0	0	0	copy fasta	ATP2B4	chr1	203621832	203749081
ATP2B4_chr1_203621832_203749081	0/0	c0010	3618	2	0	0	0	0	2	copy fasta	ATP2B4	chr1	203621832	203749081
ATP2B4_chr1_203621832_203749081	0/0	c0011	3618	2	2	0	0	0	0	copy fasta	ATP2B4	chr1	203621832	203749081
ATP2B4_chr1_203621832_203749081	0/0	c0012	3618	2	2	0	0	0	0	copy fasta	ATP2B4	chr1	203621832	203749081
ATP2B4_chr1_203621832_203749081	0/0	c0013	3618	1	0	0	0	1	0	copy fasta	ATP2B4	chr1	203621832	203749081
ATP2B4_chr1_203621832_203749081	0/0	c0014	3618	1	0	0	1	0	0	copy fasta	ATP2B4	chr1	203621832	203749081
ATP2B4_chr1_203621832_203749081	0/0	c0015	3618	1	0	0	0	0	1	copy fasta	ATP2B4	chr1	203621832	203749081
ATP2B4_chr1_203621832_203749081	0/0	c0016	3618	1	0	1	0	0	0	copy fasta	ATP2B4	chr1	203621832	203749081
ATP2B4_chr1_203621832_203749081	0/0	c0017	3618	1	0	0	1	0	0	copy fasta	ATP2B4	chr1	203621832	203749081
ATP2B4_chr1_203621832_203749081	0/0	c0018	3618	1	0	0	1	0	0	copy fasta	ATP2B4	chr1	203621832	203749081
ATP2B4_chr1_203621832_203749081	0/0	c0019	3618	1	1	0	0	0	0	copy fasta	ATP2B4	chr1	203621832	203749081
ATP2B4_chr1_203621832_203749081	0/0	c0020	3618	1	0	0	1	0	0	copy fasta	ATP2B4	chr1	203621832	203749081
ATP2B4_chr1_203621832_203749081	0/0	c0021	3618	1	0	0	0	0	1	copy fasta	ATP2B4	chr1	203621832	203749081
ATP2B4_chr1_203621832_203749081	0/0	c0022	3618	1	1	0	0	0	0	copy fasta	ATP2B4	chr1	203621832	203749081
ATP2B4_chr1_203621832_203749081	0/0	c0023	3618	1	1	0	0	0	0	copy fasta	ATP2B4	chr1	203621832	203749081
ATP2B4_chr1_203621832_203749081	0/0	c0024	3618	1	0	0	1	0	0	copy fasta	ATP2B4	chr1	203621832	203749081
ATP2C1_chr3_130889084_131008150	1/1	c0001	2760	326	77	54	153	13	27	copy fasta	ATP2C1	chr3	130889084	131008150
ATP2C1_chr3_130889084_131008150	0/0	c0002	2760	39	0	4	27	1	7	copy fasta	ATP2C1	chr3	130889084	131008150
ATP2C1_chr3_130889084_131008150	0/0	c0003	2760	7	5	2	0	0	0	copy fasta	ATP2C1	chr3	130889084	131008150
ATP2C1_chr3_130889084_131008150	0/0	c0004	2760	4	4	0	0	0	0	copy fasta	ATP2C1	chr3	130889084	131008150
ATP2C1_chr3_130889084_131008150	0/0	c0005	2760	2	2	0	0	0	0	copy fasta	ATP2C1	chr3	130889084	131008150
ATP2C1_chr3_130889084_131008150	0/0	c0006	2760	2	1	0	1	0	0	copy fasta	ATP2C1	chr3	130889084	131008150
ATP2C1_chr3_130889084_131008150	0/0	c0007	2760	1	0	0	1	0	0	copy fasta	ATP2C1	chr3	130889084	131008150
ATP2C1_chr3_130889084_131008150	0/0	c0008	2760	1	1	0	0	0	0	copy fasta	ATP2C1	chr3	130889084	131008150
ATP2C2_chr16_84363538_84469187	0/0	c0001	2841	55	7	7	38	1	2	copy fasta	ATP2C2	chr16	84363538	84469187
ATP2C2_chr16_84363538_84469187	0/0	c0002	2841	47	6	2	33	0	6	copy fasta	ATP2C2	chr16	84363538	84469187
ATP2C2_chr16_84363538_84469187	0/0	c0003	2841	45	8	14	12	2	9	copy fasta	ATP2C2	chr16	84363538	84469187
ATP2C2_chr16_84363538_84469187	0/0	c0004	2841	34	10	6	17	0	1	copy fasta	ATP2C2	chr16	84363538	84469187
ATP2C2_chr16_84363538_84469187	0/0	c0005	2841	32	12	9	9	1	1	copy fasta	ATP2C2	chr16	84363538	84469187
ATP2C2_chr16_84363538_84469187	0/0	c0006	2841	31	7	8	9	2	5	copy fasta	ATP2C2	chr16	84363538	84469187
ATP2C2_chr16_84363538_84469187	0/0	c0007	2841	30	6	4	15	1	4	copy fasta	ATP2C2	chr16	84363538	84469187
ATP2C2_chr16_84363538_84469187	0/0	c0008	2841	25	3	4	9	1	8	copy fasta	ATP2C2	chr16	84363538	84469187
ATP2C2_chr16_84363538_84469187	0/0	c0009	2841	13	0	4	5	1	3	copy fasta	ATP2C2	chr16	84363538	84469187
ATP2C2_chr16_84363538_84469187	0/0	c0010	2841	11	1	2	6	2	0	copy fasta	ATP2C2	chr16	84363538	84469187
ATP2C2_chr16_84363538_84469187	0/0	c0011	2841	9	0	3	6	0	0	copy fasta	ATP2C2	chr16	84363538	84469187
ATP2C2_chr16_84363538_84469187	0/0	c0012	2841	4	0	0	4	0	0	copy fasta	ATP2C2	chr16	84363538	84469187
ATP2C2_chr16_84363538_84469187	0/0	c0013	2841	4	4	0	0	0	0	copy fasta	ATP2C2	chr16	84363538	84469187
ATP2C2_chr16_84363538_84469187	0/0	c0014	2841	4	0	1	3	0	0	copy fasta	ATP2C2	chr16	84363538	84469187
ATP2C2_chr16_84363538_84469187	0/0	c0015	2841	3	1	1	1	0	0	copy fasta	ATP2C2	chr16	84363538	84469187
ATP2C2_chr16_84363538_84469187	0/0	c0016	2841	3	0	0	3	0	0	copy fasta	ATP2C2	chr16	84363538	84469187
ATP2C2_chr16_84363538_84469187	0/0	c0017	2841	3	0	1	0	1	1	copy fasta	ATP2C2	chr16	84363538	84469187
ATP2C2_chr16_84363538_84469187	0/0	c0018	2847	3	3	0	0	0	0	copy fasta	ATP2C2	chr16	84363538	84469187
ATP2C2_chr16_84363538_84469187	0/0	c0019	2841	2	0	0	2	0	0	copy fasta	ATP2C2	chr16	84363538	84469187
ATP2C2_chr16_84363538_84469187	0/0	c0020	2841	2	2	0	0	0	0	copy fasta	ATP2C2	chr16	84363538	84469187
ATP2C2_chr16_84363538_84469187	0/0	c0021	2841	2	0	2	0	0	0	copy fasta	ATP2C2	chr16	84363538	84469187
ATP2C2_chr16_84363538_84469187	0/0	c0022	2841	2	0	2	0	0	0	copy fasta	ATP2C2	chr16	84363538	84469187
ATP2C2_chr16_84363538_84469187	0/0	c0023	2841	2	0	0	2	0	0	copy fasta	ATP2C2	chr16	84363538	84469187
ATP2C2_chr16_84363538_84469187	0/0	c0024	2841	2	0	0	0	0	2	copy fasta	ATP2C2	chr16	84363538	84469187
ATP2C2_chr16_84363538_84469187	0/0	c0025	2841	2	0	2	0	0	0	copy fasta	ATP2C2	chr16	84363538	84469187
ATP2C2_chr16_84363538_84469187	0/0	c0026	2841	2	0	2	0	0	0	copy fasta	ATP2C2	chr16	84363538	84469187