JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SLC22A16_chr6_110419687_110481613	0/0	c0011	1734	3	3	0	0	0	0	copy fasta	SLC22A16	chr6	110419687	110481613
SLC22A16_chr6_110419687_110481613	0/0	c0012	1734	3	3	0	0	0	0	copy fasta	SLC22A16	chr6	110419687	110481613
SLC22A16_chr6_110419687_110481613	0/0	c0013	1734	2	0	0	2	0	0	copy fasta	SLC22A16	chr6	110419687	110481613
SLC22A16_chr6_110419687_110481613	0/0	c0014	1734	2	0	0	0	0	2	copy fasta	SLC22A16	chr6	110419687	110481613
SLC22A16_chr6_110419687_110481613	0/0	c0015	1734	2	2	0	0	0	0	copy fasta	SLC22A16	chr6	110419687	110481613
SLC22A16_chr6_110419687_110481613	0/0	c0016	1734	2	0	0	2	0	0	copy fasta	SLC22A16	chr6	110419687	110481613
SLC22A16_chr6_110419687_110481613	0/0	c0017	1734	1	0	0	1	0	0	copy fasta	SLC22A16	chr6	110419687	110481613
SLC22A16_chr6_110419687_110481613	0/0	c0018	1734	1	0	0	1	0	0	copy fasta	SLC22A16	chr6	110419687	110481613
SLC22A16_chr6_110419687_110481613	0/0	c0019	1734	1	0	0	1	0	0	copy fasta	SLC22A16	chr6	110419687	110481613
SLC22A16_chr6_110419687_110481613	0/0	c0020	1734	1	1	0	0	0	0	copy fasta	SLC22A16	chr6	110419687	110481613
SLC22A16_chr6_110419687_110481613	0/0	c0021	1734	1	0	0	1	0	0	copy fasta	SLC22A16	chr6	110419687	110481613
SLC22A16_chr6_110419687_110481613	0/0	c0022	1734	1	0	1	0	0	0	copy fasta	SLC22A16	chr6	110419687	110481613
SLC22A16_chr6_110419687_110481613	0/0	c0023	1734	1	0	1	0	0	0	copy fasta	SLC22A16	chr6	110419687	110481613
SLC22A16_chr6_110419687_110481613	0/0	c0024	1734	1	0	0	1	0	0	copy fasta	SLC22A16	chr6	110419687	110481613
SLC22A16_chr6_110419687_110481613	0/0	c0025	1734	1	0	0	1	0	0	copy fasta	SLC22A16	chr6	110419687	110481613
SLC22A16_chr6_110419687_110481613	0/0	c0026	1734	1	1	0	0	0	0	copy fasta	SLC22A16	chr6	110419687	110481613
SLC22A16_chr6_110419687_110481613	0/0	c0027	1734	1	1	0	0	0	0	copy fasta	SLC22A16	chr6	110419687	110481613
SLC22A16_chr6_110419687_110481613	0/0	c0028	1734	1	1	0	0	0	0	copy fasta	SLC22A16	chr6	110419687	110481613
SLC22A16_chr6_110419687_110481613	0/0	c0029	1734	1	0	0	1	0	0	copy fasta	SLC22A16	chr6	110419687	110481613
SLC22A17_chr14_23341318_23357887	1/1	c0001	1896	368	76	72	172	14	32	copy fasta	SLC22A17	chr14	23341318	23357887
SLC22A17_chr14_23341318_23357887	0/0	c0002	1896	43	11	0	19	2	11	copy fasta	SLC22A17	chr14	23341318	23357887
SLC22A17_chr14_23341318_23357887	0/0	c0003	1896	11	2	1	5	0	3	copy fasta	SLC22A17	chr14	23341318	23357887
SLC22A17_chr14_23341318_23357887	0/0	c0004	1896	3	3	0	0	0	0	copy fasta	SLC22A17	chr14	23341318	23357887
SLC22A17_chr14_23341318_23357887	0/0	c0005	1896	2	2	0	0	0	0	copy fasta	SLC22A17	chr14	23341318	23357887
SLC22A17_chr14_23341318_23357887	0/0	c0006	1896	2	0	0	2	0	0	copy fasta	SLC22A17	chr14	23341318	23357887
SLC22A17_chr14_23341318_23357887	0/0	c0007	1896	2	2	0	0	0	0	copy fasta	SLC22A17	chr14	23341318	23357887
SLC22A17_chr14_23341318_23357887	0/0	c0008	1896	1	1	0	0	0	0	copy fasta	SLC22A17	chr14	23341318	23357887
SLC22A17_chr14_23341318_23357887	0/0	c0009	1896	1	0	0	0	0	1	copy fasta	SLC22A17	chr14	23341318	23357887
SLC22A17_chr14_23341318_23357887	0/0	c0010	1896	1	0	0	1	0	0	copy fasta	SLC22A17	chr14	23341318	23357887
SLC22A17_chr14_23341318_23357887	0/0	c0011	1896	1	1	0	0	0	0	copy fasta	SLC22A17	chr14	23341318	23357887
SLC22A17_chr14_23341318_23357887	0/0	c0012	1896	1	0	0	1	0	0	copy fasta	SLC22A17	chr14	23341318	23357887
SLC22A17_chr14_23341318_23357887	0/0	c0013	1896	1	1	0	0	0	0	copy fasta	SLC22A17	chr14	23341318	23357887
SLC22A17_chr14_23341318_23357887	0/0	c0014	1896	1	0	0	0	0	1	copy fasta	SLC22A17	chr14	23341318	23357887
SLC22A17_chr14_23341318_23357887	0/0	c0015	1896	1	1	0	0	0	0	copy fasta	SLC22A17	chr14	23341318	23357887
SLC22A17_chr14_23341318_23357887	0/0	c0016	1896	1	0	1	0	0	0	copy fasta	SLC22A17	chr14	23341318	23357887
SLC22A18_chr11_2897278_2930246	0/0	c0001	1275	156	9	31	82	7	27	copy fasta	SLC22A18	chr11	2897278	2930246
SLC22A18_chr11_2897278_2930246	0/0	c0002	1275	77	15	23	29	2	8	copy fasta	SLC22A18	chr11	2897278	2930246
SLC22A18_chr11_2897278_2930246	0/0	c0003	1275	54	28	6	12	3	5	copy fasta	SLC22A18	chr11	2897278	2930246
SLC22A18_chr11_2897278_2930246	0/0	c0004	1275	22	18	3	0	1	0	copy fasta	SLC22A18	chr11	2897278	2930246
SLC22A18_chr11_2897278_2930246	0/0	c0005	1275	17	0	5	10	1	1	copy fasta	SLC22A18	chr11	2897278	2930246
SLC22A18_chr11_2897278_2930246	0/1	c0006	1275	11	0	4	0	3	3	copy fasta	SLC22A18	chr11	2897278	2930246
SLC22A18_chr11_2897278_2930246	0/0	c0007	1275	7	7	0	0	0	0	copy fasta	SLC22A18	chr11	2897278	2930246
SLC22A18_chr11_2897278_2930246	0/0	c0008	1275	7	7	0	0	0	0	copy fasta	SLC22A18	chr11	2897278	2930246
SLC22A18_chr11_2897278_2930246	0/0	c0009	1275	5	0	0	5	0	0	copy fasta	SLC22A18	chr11	2897278	2930246
SLC22A18_chr11_2897278_2930246	0/0	c0010	1275	4	0	0	3	0	1	copy fasta	SLC22A18	chr11	2897278	2930246
SLC22A18_chr11_2897278_2930246	0/0	c0011	1275	4	0	0	4	0	0	copy fasta	SLC22A18	chr11	2897278	2930246
SLC22A18_chr11_2897278_2930246	0/0	c0012	1275	3	0	0	3	0	0	copy fasta	SLC22A18	chr11	2897278	2930246
SLC22A18_chr11_2897278_2930246	0/0	c0013	1275	3	0	3	0	0	0	copy fasta	SLC22A18	chr11	2897278	2930246
SLC22A18_chr11_2897278_2930246	0/0	c0014	1275	3	0	0	3	0	0	copy fasta	SLC22A18	chr11	2897278	2930246
SLC22A18_chr11_2897278_2930246	0/0	c0015	1275	3	0	1	0	1	1	copy fasta	SLC22A18	chr11	2897278	2930246