JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SLC22A18_chr11_2897278_2930246	0/0	c0016	1275	2	2	0	0	0	0	copy fasta	SLC22A18	chr11	2897278	2930246
SLC22A18_chr11_2897278_2930246	0/0	c0017	1275	2	2	0	0	0	0	copy fasta	SLC22A18	chr11	2897278	2930246
SLC22A18_chr11_2897278_2930246	0/0	c0018	1275	2	2	0	0	0	0	copy fasta	SLC22A18	chr11	2897278	2930246
SLC22A18_chr11_2897278_2930246	0/0	c0019	1275	2	0	0	2	0	0	copy fasta	SLC22A18	chr11	2897278	2930246
SLC22A18_chr11_2897278_2930246	0/0	c0020	1275	2	1	1	0	0	0	copy fasta	SLC22A18	chr11	2897278	2930246
SLC22A18_chr11_2897278_2930246	0/0	c0021	1275	2	1	0	0	0	1	copy fasta	SLC22A18	chr11	2897278	2930246
SLC22A18_chr11_2897278_2930246	0/0	c0022	1275	1	0	0	1	0	0	copy fasta	SLC22A18	chr11	2897278	2930246
SLC22A18_chr11_2897278_2930246	0/0	c0023	1275	1	0	1	0	0	0	copy fasta	SLC22A18	chr11	2897278	2930246
SLC22A18_chr11_2897278_2930246	0/0	c0024	1275	1	1	0	0	0	0	copy fasta	SLC22A18	chr11	2897278	2930246
SLC22A18_chr11_2897278_2930246	0/0	c0025	1275	1	1	0	0	0	0	copy fasta	SLC22A18	chr11	2897278	2930246
SLC22A18_chr11_2897278_2930246	0/0	c0026	1275	1	1	0	0	0	0	copy fasta	SLC22A18	chr11	2897278	2930246
SLC22A18_chr11_2897278_2930246	0/0	c0027	1275	1	0	0	1	0	0	copy fasta	SLC22A18	chr11	2897278	2930246
SLC22A18_chr11_2897278_2930246	0/0	c0028	1275	1	0	1	0	0	0	copy fasta	SLC22A18	chr11	2897278	2930246
SLC22A18_chr11_2897278_2930246	0/0	c0029	1275	1	0	0	0	0	1	copy fasta	SLC22A18	chr11	2897278	2930246
SLC22A18_chr11_2897278_2930246	0/0	c0030	1275	1	0	0	1	0	0	copy fasta	SLC22A18	chr11	2897278	2930246
SLC22A18_chr11_2897278_2930246	0/0	c0031	1275	1	0	0	1	0	0	copy fasta	SLC22A18	chr11	2897278	2930246
SLC22A18_chr11_2897278_2930246	0/0	c0032	1275	1	1	0	0	0	0	copy fasta	SLC22A18	chr11	2897278	2930246
SLC22A18_chr11_2897278_2930246	0/0	c0033	1275	1	0	1	0	0	0	copy fasta	SLC22A18	chr11	2897278	2930246
SLC22A18_chr11_2897278_2930246	0/0	c0034	1275	1	1	0	0	0	0	copy fasta	SLC22A18	chr11	2897278	2930246
SLC22A18_chr11_2897278_2930246	0/0	c0035	1275	1	1	0	0	0	0	copy fasta	SLC22A18	chr11	2897278	2930246
SLC22A18_chr11_2897278_2930246	0/0	c0036	1275	1	0	0	1	0	0	copy fasta	SLC22A18	chr11	2897278	2930246
SLC22A18_chr11_2897278_2930246	0/0	c0037	1275	1	1	0	0	0	0	copy fasta	SLC22A18	chr11	2897278	2930246
SLC22A18_chr11_2897278_2930246	0/0	c0038	1275	1	1	0	0	0	0	copy fasta	SLC22A18	chr11	2897278	2930246
SLC22A1_chr6_160116815_160163718	0/1	c0001	1663	118	22	18	71	1	5	copy fasta	SLC22A1	chr6	160116815	160163718
SLC22A1_chr6_160116815_160163718	0/0	c0002	1663	89	21	11	45	2	10	copy fasta	SLC22A1	chr6	160116815	160163718
SLC22A1_chr6_160116815_160163718	0/0	c0003	1665	49	9	9	13	8	10	copy fasta	SLC22A1	chr6	160116815	160163718
SLC22A1_chr6_160116815_160163718	1/0	c0004	1665	42	1	10	22	1	7	copy fasta	SLC22A1	chr6	160116815	160163718
SLC22A1_chr6_160116815_160163718	0/0	c0005	1663	34	2	0	30	0	2	copy fasta	SLC22A1	chr6	160116815	160163718
SLC22A1_chr6_160116815_160163718	0/0	c0006	1660	28	3	16	0	1	8	copy fasta	SLC22A1	chr6	160116815	160163718
SLC22A1_chr6_160116815_160163718	0/0	c0007	1665	7	7	0	0	0	0	copy fasta	SLC22A1	chr6	160116815	160163718
SLC22A1_chr6_160116815_160163718	0/0	c0008	1663	6	6	0	0	0	0	copy fasta	SLC22A1	chr6	160116815	160163718
SLC22A1_chr6_160116815_160163718	0/0	c0009	1665	5	0	2	0	2	1	copy fasta	SLC22A1	chr6	160116815	160163718
SLC22A1_chr6_160116815_160163718	0/0	c0010	1663	3	0	3	0	0	0	copy fasta	SLC22A1	chr6	160116815	160163718
SLC22A1_chr6_160116815_160163718	0/0	c0011	1660	3	0	2	0	1	0	copy fasta	SLC22A1	chr6	160116815	160163718
SLC22A1_chr6_160116815_160163718	0/0	c0012	1663	3	3	0	0	0	0	copy fasta	SLC22A1	chr6	160116815	160163718
SLC22A1_chr6_160116815_160163718	0/0	c0013	1663	2	2	0	0	0	0	copy fasta	SLC22A1	chr6	160116815	160163718
SLC22A1_chr6_160116815_160163718	0/0	c0014	1663	2	2	0	0	0	0	copy fasta	SLC22A1	chr6	160116815	160163718
SLC22A1_chr6_160116815_160163718	0/0	c0015	1665	2	0	0	2	0	0	copy fasta	SLC22A1	chr6	160116815	160163718
SLC22A1_chr6_160116815_160163718	0/0	c0016	1663	2	0	0	2	0	0	copy fasta	SLC22A1	chr6	160116815	160163718
SLC22A1_chr6_160116815_160163718	0/0	c0017	1663	2	2	0	0	0	0	copy fasta	SLC22A1	chr6	160116815	160163718
SLC22A1_chr6_160116815_160163718	0/0	c0018	1660	2	2	0	0	0	0	copy fasta	SLC22A1	chr6	160116815	160163718
SLC22A1_chr6_160116815_160163718	0/0	c0019	1663	1	1	0	0	0	0	copy fasta	SLC22A1	chr6	160116815	160163718
SLC22A1_chr6_160116815_160163718	0/0	c0020	1660	1	0	0	0	0	1	copy fasta	SLC22A1	chr6	160116815	160163718
SLC22A1_chr6_160116815_160163718	0/0	c0021	1663	1	0	0	1	0	0	copy fasta	SLC22A1	chr6	160116815	160163718
SLC22A1_chr6_160116815_160163718	0/0	c0022	1663	1	0	0	1	0	0	copy fasta	SLC22A1	chr6	160116815	160163718
SLC22A1_chr6_160116815_160163718	0/0	c0023	1663	1	1	0	0	0	0	copy fasta	SLC22A1	chr6	160116815	160163718
SLC22A1_chr6_160116815_160163718	0/0	c0024	1663	1	1	0	0	0	0	copy fasta	SLC22A1	chr6	160116815	160163718
SLC22A1_chr6_160116815_160163718	0/0	c0025	1663	1	1	0	0	0	0	copy fasta	SLC22A1	chr6	160116815	160163718
SLC22A1_chr6_160116815_160163718	0/0	c0026	1665	1	0	0	1	0	0	copy fasta	SLC22A1	chr6	160116815	160163718
SLC22A1_chr6_160116815_160163718	0/0	c0027	1665	1	1	0	0	0	0	copy fasta	SLC22A1	chr6	160116815	160163718