JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SLC22A1_chr6_160116815_160163718	0/0	c0028	1663	1	0	1	0	0	0	copy fasta	SLC22A1	chr6	160116815	160163718
SLC22A1_chr6_160116815_160163718	0/0	c0029	1663	1	1	0	0	0	0	copy fasta	SLC22A1	chr6	160116815	160163718
SLC22A1_chr6_160116815_160163718	0/0	c0030	1660	1	1	0	0	0	0	copy fasta	SLC22A1	chr6	160116815	160163718
SLC22A1_chr6_160116815_160163718	0/0	c0031	1663	1	1	0	0	0	0	copy fasta	SLC22A1	chr6	160116815	160163718
SLC22A1_chr6_160116815_160163718	0/0	c0032	1663	1	0	0	0	0	1	copy fasta	SLC22A1	chr6	160116815	160163718
SLC22A1_chr6_160116815_160163718	0/0	c0033	1663	1	0	0	0	0	1	copy fasta	SLC22A1	chr6	160116815	160163718
SLC22A1_chr6_160116815_160163718	0/0	c0034	1663	1	0	0	1	0	0	copy fasta	SLC22A1	chr6	160116815	160163718
SLC22A1_chr6_160116815_160163718	0/0	c0035	1663	1	0	0	1	0	0	copy fasta	SLC22A1	chr6	160116815	160163718
SLC22A23_chr6_3263973_3462050	0/1	c0001	2061	166	72	38	39	0	16	copy fasta	SLC22A23	chr6	3263973	3462050
SLC22A23_chr6_3263973_3462050	1/0	c0002	2061	30	0	6	19	0	4	copy fasta	SLC22A23	chr6	3263973	3462050
SLC22A23_chr6_3263973_3462050	0/0	c0003	2061	17	5	4	7	0	1	copy fasta	SLC22A23	chr6	3263973	3462050
SLC22A23_chr6_3263973_3462050	0/0	c0004	2061	1	0	0	0	0	1	copy fasta	SLC22A23	chr6	3263973	3462050
SLC22A23_chr6_3263973_3462050	0/0	c0005	2061	1	1	0	0	0	0	copy fasta	SLC22A23	chr6	3263973	3462050
SLC22A23_chr6_3263973_3462050	0/0	c0006	2061	1	0	1	0	0	0	copy fasta	SLC22A23	chr6	3263973	3462050
SLC22A23_chr6_3263973_3462050	0/0	c0007	2061	1	1	0	0	0	0	copy fasta	SLC22A23	chr6	3263973	3462050
SLC22A23_chr6_3263973_3462050	0/0	c0008	2061	1	1	0	0	0	0	copy fasta	SLC22A23	chr6	3263973	3462050
SLC22A23_chr6_3263973_3462050	0/0	c0009	2061	1	0	1	0	0	0	copy fasta	SLC22A23	chr6	3263973	3462050
SLC22A23_chr6_3263973_3462050	0/0	c0010	2061	1	1	0	0	0	0	copy fasta	SLC22A23	chr6	3263973	3462050
SLC22A23_chr6_3263973_3462050	0/0	c0011	2061	1	1	0	0	0	0	copy fasta	SLC22A23	chr6	3263973	3462050
SLC22A23_chr6_3263973_3462050	0/0	c0012	2061	1	0	0	1	0	0	copy fasta	SLC22A23	chr6	3263973	3462050
SLC22A24_chr11_63074940_63149221	0/1	c0001	1659	92	2	22	46	6	15	copy fasta	SLC22A24	chr11	63074940	63149221
SLC22A24_chr11_63074940_63149221	0/0	c0002	1659	71	14	4	38	5	10	copy fasta	SLC22A24	chr11	63074940	63149221
SLC22A24_chr11_63074940_63149221	0/0	c0003	1659	56	11	11	28	2	4	copy fasta	SLC22A24	chr11	63074940	63149221
SLC22A24_chr11_63074940_63149221	0/0	c0004	1659	34	3	14	6	4	7	copy fasta	SLC22A24	chr11	63074940	63149221
SLC22A24_chr11_63074940_63149221	0/0	c0005	1659	22	7	1	13	0	1	copy fasta	SLC22A24	chr11	63074940	63149221
SLC22A24_chr11_63074940_63149221	0/0	c0006	1659	20	0	1	19	0	0	copy fasta	SLC22A24	chr11	63074940	63149221
SLC22A24_chr11_63074940_63149221	0/0	c0007	1659	17	16	1	0	0	0	copy fasta	SLC22A24	chr11	63074940	63149221
SLC22A24_chr11_63074940_63149221	0/0	c0008	1659	9	5	0	4	0	0	copy fasta	SLC22A24	chr11	63074940	63149221
SLC22A24_chr11_63074940_63149221	0/0	c0009	1659	8	8	0	0	0	0	copy fasta	SLC22A24	chr11	63074940	63149221
SLC22A24_chr11_63074940_63149221	0/0	c0010	1659	6	0	0	6	0	0	copy fasta	SLC22A24	chr11	63074940	63149221
SLC22A24_chr11_63074940_63149221	0/0	c0011	1659	6	6	0	0	0	0	copy fasta	SLC22A24	chr11	63074940	63149221
SLC22A24_chr11_63074940_63149221	0/0	c0012	1659	6	0	3	0	1	2	copy fasta	SLC22A24	chr11	63074940	63149221
SLC22A24_chr11_63074940_63149221	0/0	c0013	1659	4	4	0	0	0	0	copy fasta	SLC22A24	chr11	63074940	63149221
SLC22A24_chr11_63074940_63149221	0/0	c0014	1659	2	1	1	0	0	0	copy fasta	SLC22A24	chr11	63074940	63149221
SLC22A24_chr11_63074940_63149221	0/0	c0015	1659	2	2	0	0	0	0	copy fasta	SLC22A24	chr11	63074940	63149221
SLC22A24_chr11_63074940_63149221	0/0	c0016	1659	1	0	0	1	0	0	copy fasta	SLC22A24	chr11	63074940	63149221
SLC22A24_chr11_63074940_63149221	0/0	c0017	1659	1	0	0	1	0	0	copy fasta	SLC22A24	chr11	63074940	63149221
SLC22A24_chr11_63074940_63149221	0/0	c0018	1659	1	1	0	0	0	0	copy fasta	SLC22A24	chr11	63074940	63149221
SLC22A24_chr11_63074940_63149221	0/0	c0019	1659	1	1	0	0	0	0	copy fasta	SLC22A24	chr11	63074940	63149221
SLC22A24_chr11_63074940_63149221	1/0	c0020	1659	1	0	0	0	0	0	copy fasta	SLC22A24	chr11	63074940	63149221
SLC22A24_chr11_63074940_63149221	0/0	c0021	1659	1	1	0	0	0	0	copy fasta	SLC22A24	chr11	63074940	63149221
SLC22A24_chr11_63074940_63149221	0/0	c0022	1335	1	0	0	1	0	0	copy fasta	SLC22A24	chr11	63074940	63149221
SLC22A24_chr11_63074940_63149221	0/0	c0023	1659	1	1	0	0	0	0	copy fasta	SLC22A24	chr11	63074940	63149221
SLC22A24_chr11_63074940_63149221	0/0	c0024	1659	1	1	0	0	0	0	copy fasta	SLC22A24	chr11	63074940	63149221
SLC22A24_chr11_63074940_63149221	0/0	c0025	1659	1	0	0	1	0	0	copy fasta	SLC22A24	chr11	63074940	63149221
SLC22A24_chr11_63074940_63149221	0/0	c0026	1659	1	0	0	0	0	1	copy fasta	SLC22A24	chr11	63074940	63149221
SLC22A25_chr11_63153437_63248599	0/0	c0001	1644	145	13	25	86	7	14	copy fasta	SLC22A25	chr11	63153437	63248599
SLC22A25_chr11_63153437_63248599	1/1	c0002	1644	141	27	31	55	8	18	copy fasta	SLC22A25	chr11	63153437	63248599
SLC22A25_chr11_63153437_63248599	0/0	c0003	1644	20	14	2	0	1	3	copy fasta	SLC22A25	chr11	63153437	63248599
SLC22A25_chr11_63153437_63248599	0/0	c0004	1644	11	11	0	0	0	0	copy fasta	SLC22A25	chr11	63153437	63248599