JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SLC22A25_chr11_63153437_63248599	0/0	c0005	1644	5	5	0	0	0	0	copy fasta	SLC22A25	chr11	63153437	63248599
SLC22A25_chr11_63153437_63248599	0/0	c0006	1644	4	0	4	0	0	0	copy fasta	SLC22A25	chr11	63153437	63248599
SLC22A25_chr11_63153437_63248599	0/0	c0007	1644	4	4	0	0	0	0	copy fasta	SLC22A25	chr11	63153437	63248599
SLC22A25_chr11_63153437_63248599	0/0	c0008	1644	3	3	0	0	0	0	copy fasta	SLC22A25	chr11	63153437	63248599
SLC22A25_chr11_63153437_63248599	0/0	c0009	1644	2	0	1	0	0	1	copy fasta	SLC22A25	chr11	63153437	63248599
SLC22A25_chr11_63153437_63248599	0/0	c0010	1644	2	0	0	2	0	0	copy fasta	SLC22A25	chr11	63153437	63248599
SLC22A25_chr11_63153437_63248599	0/0	c0011	1644	1	1	0	0	0	0	copy fasta	SLC22A25	chr11	63153437	63248599
SLC22A25_chr11_63153437_63248599	0/0	c0012	1644	1	1	0	0	0	0	copy fasta	SLC22A25	chr11	63153437	63248599
SLC22A25_chr11_63153437_63248599	0/0	c0013	1644	1	0	1	0	0	0	copy fasta	SLC22A25	chr11	63153437	63248599
SLC22A25_chr11_63153437_63248599	0/0	c0014	1644	1	0	0	1	0	0	copy fasta	SLC22A25	chr11	63153437	63248599
SLC22A25_chr11_63153437_63248599	0/0	c0015	1644	1	1	0	0	0	0	copy fasta	SLC22A25	chr11	63153437	63248599
SLC22A25_chr11_63153437_63248599	0/0	c0016	1644	1	1	0	0	0	0	copy fasta	SLC22A25	chr11	63153437	63248599
SLC22A25_chr11_63153437_63248599	0/0	c0017	1644	1	1	0	0	0	0	copy fasta	SLC22A25	chr11	63153437	63248599
SLC22A2_chr6_160211755_160263821	0/0	c0001	1668	129	21	24	60	7	17	copy fasta	SLC22A2	chr6	160211755	160263821
SLC22A2_chr6_160211755_160263821	0/0	c0002	1668	59	4	12	25	5	13	copy fasta	SLC22A2	chr6	160211755	160263821
SLC22A2_chr6_160211755_160263821	0/1	c0003	1668	46	20	7	14	0	4	copy fasta	SLC22A2	chr6	160211755	160263821
SLC22A2_chr6_160211755_160263821	1/0	c0004	1668	41	10	5	22	0	3	copy fasta	SLC22A2	chr6	160211755	160263821
SLC22A2_chr6_160211755_160263821	0/0	c0005	1668	15	14	0	1	0	0	copy fasta	SLC22A2	chr6	160211755	160263821
SLC22A2_chr6_160211755_160263821	0/0	c0006	1668	7	7	0	0	0	0	copy fasta	SLC22A2	chr6	160211755	160263821
SLC22A2_chr6_160211755_160263821	0/0	c0007	1668	7	5	0	2	0	0	copy fasta	SLC22A2	chr6	160211755	160263821
SLC22A2_chr6_160211755_160263821	0/0	c0008	1668	1	0	0	0	0	1	copy fasta	SLC22A2	chr6	160211755	160263821
SLC22A2_chr6_160211755_160263821	0/0	c0009	1668	1	1	0	0	0	0	copy fasta	SLC22A2	chr6	160211755	160263821
SLC22A2_chr6_160211755_160263821	0/0	c0010	1668	1	0	0	1	0	0	copy fasta	SLC22A2	chr6	160211755	160263821
SLC22A2_chr6_160211755_160263821	0/0	c0011	1668	1	0	0	1	0	0	copy fasta	SLC22A2	chr6	160211755	160263821
SLC22A2_chr6_160211755_160263821	0/0	c0012	1668	1	1	0	0	0	0	copy fasta	SLC22A2	chr6	160211755	160263821
SLC22A2_chr6_160211755_160263821	0/0	c0013	1668	1	1	0	0	0	0	copy fasta	SLC22A2	chr6	160211755	160263821
SLC22A31_chr16_89190761_89205537	1/0	c0001	1341	101	51	31	2	6	10	copy fasta	SLC22A31	chr16	89190761	89205537
SLC22A31_chr16_89190761_89205537	0/1	c0002	1294	89	5	4	71	3	5	copy fasta	SLC22A31	chr16	89190761	89205537
SLC22A31_chr16_89190761_89205537	0/0	c0003	1341	64	2	21	30	2	9	copy fasta	SLC22A31	chr16	89190761	89205537
SLC22A31_chr16_89190761_89205537	0/0	c0004	1294	45	17	7	15	0	6	copy fasta	SLC22A31	chr16	89190761	89205537
SLC22A31_chr16_89190761_89205537	0/0	c0005	1341	43	0	6	35	0	2	copy fasta	SLC22A31	chr16	89190761	89205537
SLC22A31_chr16_89190761_89205537	0/0	c0006	1338	19	0	0	15	0	4	copy fasta	SLC22A31	chr16	89190761	89205537
SLC22A31_chr16_89190761_89205537	0/0	c0007	1294	18	0	8	2	3	5	copy fasta	SLC22A31	chr16	89190761	89205537
SLC22A31_chr16_89190761_89205537	0/0	c0008	1294	12	4	4	0	1	3	copy fasta	SLC22A31	chr16	89190761	89205537
SLC22A31_chr16_89190761_89205537	0/0	c0009	1338	11	0	2	9	0	0	copy fasta	SLC22A31	chr16	89190761	89205537
SLC22A31_chr16_89190761_89205537	0/0	c0010	1341	5	0	0	4	0	1	copy fasta	SLC22A31	chr16	89190761	89205537
SLC22A31_chr16_89190761_89205537	0/0	c0011	1294	2	2	0	0	0	0	copy fasta	SLC22A31	chr16	89190761	89205537
SLC22A31_chr16_89190761_89205537	0/0	c0012	1341	2	2	0	0	0	0	copy fasta	SLC22A31	chr16	89190761	89205537
SLC22A31_chr16_89190761_89205537	0/0	c0013	1341	1	0	0	0	1	0	copy fasta	SLC22A31	chr16	89190761	89205537
SLC22A31_chr16_89190761_89205537	0/0	c0014	1341	1	1	0	0	0	0	copy fasta	SLC22A31	chr16	89190761	89205537
SLC22A31_chr16_89190761_89205537	0/0	c0015	1341	1	0	1	0	0	0	copy fasta	SLC22A31	chr16	89190761	89205537
SLC22A31_chr16_89190761_89205537	0/0	c0016	1294	1	0	0	1	0	0	copy fasta	SLC22A31	chr16	89190761	89205537
SLC22A31_chr16_89190761_89205537	0/0	c0017	1294	1	0	0	1	0	0	copy fasta	SLC22A31	chr16	89190761	89205537
SLC22A31_chr16_89190761_89205537	0/0	c0018	1341	1	1	0	0	0	0	copy fasta	SLC22A31	chr16	89190761	89205537
SLC22A31_chr16_89190761_89205537	0/0	c0019	1294	1	0	0	0	0	1	copy fasta	SLC22A31	chr16	89190761	89205537
SLC22A31_chr16_89190761_89205537	0/0	c0020	1294	1	0	0	1	0	0	copy fasta	SLC22A31	chr16	89190761	89205537
SLC22A31_chr16_89190761_89205537	0/0	c0021	1294	1	0	0	1	0	0	copy fasta	SLC22A31	chr16	89190761	89205537
SLC22A31_chr16_89190761_89205537	0/0	c0022	1338	1	0	0	0	0	1	copy fasta	SLC22A31	chr16	89190761	89205537
SLC22A31_chr16_89190761_89205537	0/0	c0023	1294	1	1	0	0	0	0	copy fasta	SLC22A31	chr16	89190761	89205537
SLC22A31_chr16_89190761_89205537	0/0	c0024	1294	1	0	0	1	0	0	copy fasta	SLC22A31	chr16	89190761	89205537