JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SLC22A7_chr6_43293260_43310538	0/0	c0003	1647	6	6	0	0	0	0	copy fasta	SLC22A7	chr6	43293260	43310538
SLC22A7_chr6_43293260_43310538	0/0	c0004	1647	3	3	0	0	0	0	copy fasta	SLC22A7	chr6	43293260	43310538
SLC22A7_chr6_43293260_43310538	0/0	c0005	1647	2	0	0	2	0	0	copy fasta	SLC22A7	chr6	43293260	43310538
SLC22A7_chr6_43293260_43310538	0/0	c0006	1647	2	0	0	2	0	0	copy fasta	SLC22A7	chr6	43293260	43310538
SLC22A7_chr6_43293260_43310538	0/0	c0007	1647	1	0	0	1	0	0	copy fasta	SLC22A7	chr6	43293260	43310538
SLC22A7_chr6_43293260_43310538	0/0	c0008	1647	1	0	0	1	0	0	copy fasta	SLC22A7	chr6	43293260	43310538
SLC22A7_chr6_43293260_43310538	0/0	c0009	1647	1	0	0	0	0	1	copy fasta	SLC22A7	chr6	43293260	43310538
SLC22A7_chr6_43293260_43310538	0/0	c0010	1647	1	1	0	0	0	0	copy fasta	SLC22A7	chr6	43293260	43310538
SLC22A7_chr6_43293260_43310538	0/0	c0011	1647	1	0	1	0	0	0	copy fasta	SLC22A7	chr6	43293260	43310538
SLC22A8_chr11_62987824_63020841	1/1	c0001	1629	252	33	49	125	10	33	copy fasta	SLC22A8	chr11	62987824	63020841
SLC22A8_chr11_62987824_63020841	0/0	c0002	1629	75	0	16	45	5	9	copy fasta	SLC22A8	chr11	62987824	63020841
SLC22A8_chr11_62987824_63020841	0/0	c0003	1629	65	52	2	9	0	2	copy fasta	SLC22A8	chr11	62987824	63020841
SLC22A8_chr11_62987824_63020841	0/0	c0004	1629	15	0	0	15	0	0	copy fasta	SLC22A8	chr11	62987824	63020841
SLC22A8_chr11_62987824_63020841	0/0	c0005	1629	6	2	2	2	0	0	copy fasta	SLC22A8	chr11	62987824	63020841
SLC22A8_chr11_62987824_63020841	0/0	c0006	1629	4	3	1	0	0	0	copy fasta	SLC22A8	chr11	62987824	63020841
SLC22A8_chr11_62987824_63020841	0/0	c0007	1629	4	1	0	3	0	0	copy fasta	SLC22A8	chr11	62987824	63020841
SLC22A8_chr11_62987824_63020841	0/0	c0008	1629	2	0	0	2	0	0	copy fasta	SLC22A8	chr11	62987824	63020841
SLC22A8_chr11_62987824_63020841	0/0	c0009	1629	2	2	0	0	0	0	copy fasta	SLC22A8	chr11	62987824	63020841
SLC22A8_chr11_62987824_63020841	0/0	c0010	1629	2	0	0	0	0	2	copy fasta	SLC22A8	chr11	62987824	63020841
SLC22A8_chr11_62987824_63020841	0/0	c0011	1629	1	1	0	0	0	0	copy fasta	SLC22A8	chr11	62987824	63020841
SLC22A8_chr11_62987824_63020841	0/0	c0012	1629	1	0	1	0	0	0	copy fasta	SLC22A8	chr11	62987824	63020841
SLC22A8_chr11_62987824_63020841	0/0	c0013	1629	1	0	0	0	1	0	copy fasta	SLC22A8	chr11	62987824	63020841
SLC22A8_chr11_62987824_63020841	0/0	c0014	1629	1	0	1	0	0	0	copy fasta	SLC22A8	chr11	62987824	63020841
SLC22A8_chr11_62987824_63020841	0/0	c0015	1629	1	0	0	1	0	0	copy fasta	SLC22A8	chr11	62987824	63020841
SLC22A9_chr11_63364785_63415294	1/1	c0001	1662	313	73	58	119	17	44	copy fasta	SLC22A9	chr11	63364785	63415294
SLC22A9_chr11_63364785_63415294	0/0	c0002	1662	16	15	1	0	0	0	copy fasta	SLC22A9	chr11	63364785	63415294
SLC22A9_chr11_63364785_63415294	0/0	c0003	1662	3	0	2	0	1	0	copy fasta	SLC22A9	chr11	63364785	63415294
SLC22A9_chr11_63364785_63415294	0/0	c0004	1662	2	2	0	0	0	0	copy fasta	SLC22A9	chr11	63364785	63415294
SLC22A9_chr11_63364785_63415294	0/0	c0005	1662	2	0	0	2	0	0	copy fasta	SLC22A9	chr11	63364785	63415294
SLC22A9_chr11_63364785_63415294	0/0	c0006	1662	1	0	0	0	0	1	copy fasta	SLC22A9	chr11	63364785	63415294
SLC22A9_chr11_63364785_63415294	0/0	c0007	1662	1	0	0	1	0	0	copy fasta	SLC22A9	chr11	63364785	63415294
SLC22A9_chr11_63364785_63415294	0/0	c0008	1662	1	0	0	0	0	1	copy fasta	SLC22A9	chr11	63364785	63415294
SLC22A9_chr11_63364785_63415294	0/0	c0009	1662	1	0	1	0	0	0	copy fasta	SLC22A9	chr11	63364785	63415294
SLC22A9_chr11_63364785_63415294	0/0	c0010	1662	1	0	1	0	0	0	copy fasta	SLC22A9	chr11	63364785	63415294
SLC22A9_chr11_63364785_63415294	0/0	c0011	1662	1	0	0	1	0	0	copy fasta	SLC22A9	chr11	63364785	63415294
SLC22A9_chr11_63364785_63415294	0/0	c0012	1662	1	1	0	0	0	0	copy fasta	SLC22A9	chr11	63364785	63415294
SLC22A9_chr11_63364785_63415294	0/0	c0013	1662	1	1	0	0	0	0	copy fasta	SLC22A9	chr11	63364785	63415294
SLC22A9_chr11_63364785_63415294	0/0	c0014	1662	1	0	1	0	0	0	copy fasta	SLC22A9	chr11	63364785	63415294
SLC22A9_chr11_63364785_63415294	0/0	c0015	1662	1	0	0	1	0	0	copy fasta	SLC22A9	chr11	63364785	63415294
SLC23A1_chr5_139362196_139388297	1/0	c0001	1797	303	69	55	131	17	30	copy fasta	SLC23A1	chr5	139362196	139388297
SLC23A1_chr5_139362196_139388297	0/0	c0002	1797	16	9	2	1	0	4	copy fasta	SLC23A1	chr5	139362196	139388297
SLC23A1_chr5_139362196_139388297	0/1	c0003	1797	15	4	5	5	0	0	copy fasta	SLC23A1	chr5	139362196	139388297
SLC23A1_chr5_139362196_139388297	0/0	c0004	1797	3	0	1	0	1	1	copy fasta	SLC23A1	chr5	139362196	139388297
SLC23A1_chr5_139362196_139388297	0/0	c0005	1797	3	3	0	0	0	0	copy fasta	SLC23A1	chr5	139362196	139388297
SLC23A1_chr5_139362196_139388297	0/0	c0006	1797	2	2	0	0	0	0	copy fasta	SLC23A1	chr5	139362196	139388297
SLC23A1_chr5_139362196_139388297	0/0	c0007	1797	2	2	0	0	0	0	copy fasta	SLC23A1	chr5	139362196	139388297
SLC23A1_chr5_139362196_139388297	0/0	c0008	1797	1	1	0	0	0	0	copy fasta	SLC23A1	chr5	139362196	139388297
SLC23A1_chr5_139362196_139388297	0/0	c0009	1797	1	0	0	1	0	0	copy fasta	SLC23A1	chr5	139362196	139388297
SLC23A1_chr5_139362196_139388297	0/0	c0010	1797	1	0	0	0	0	1	copy fasta	SLC23A1	chr5	139362196	139388297
SLC23A1_chr5_139362196_139388297	0/0	c0011	1797	1	0	0	1	0	0	copy fasta	SLC23A1	chr5	139362196	139388297