JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SLC23A1_chr5_139362196_139388297	0/0	c0012	1797	1	0	1	0	0	0	copy fasta	SLC23A1	chr5	139362196	139388297
SLC23A1_chr5_139362196_139388297	0/0	c0013	1797	1	0	0	1	0	0	copy fasta	SLC23A1	chr5	139362196	139388297
SLC23A2_chr20_4847358_5006510	0/0	c0001	1953	50	18	10	16	1	5	copy fasta	SLC23A2	chr20	4847358	5006510
SLC23A2_chr20_4847358_5006510	0/0	c0002	1953	45	6	10	21	4	4	copy fasta	SLC23A2	chr20	4847358	5006510
SLC23A2_chr20_4847358_5006510	1/1	c0003	1953	31	8	11	5	2	3	copy fasta	SLC23A2	chr20	4847358	5006510
SLC23A2_chr20_4847358_5006510	0/0	c0004	1953	21	11	1	5	1	3	copy fasta	SLC23A2	chr20	4847358	5006510
SLC23A2_chr20_4847358_5006510	0/0	c0005	1953	11	10	1	0	0	0	copy fasta	SLC23A2	chr20	4847358	5006510
SLC23A2_chr20_4847358_5006510	0/0	c0006	1953	8	2	2	0	1	3	copy fasta	SLC23A2	chr20	4847358	5006510
SLC23A2_chr20_4847358_5006510	0/0	c0007	1953	8	6	2	0	0	0	copy fasta	SLC23A2	chr20	4847358	5006510
SLC23A2_chr20_4847358_5006510	0/0	c0008	1953	7	3	3	0	0	1	copy fasta	SLC23A2	chr20	4847358	5006510
SLC23A2_chr20_4847358_5006510	0/0	c0009	1953	4	3	0	0	1	0	copy fasta	SLC23A2	chr20	4847358	5006510
SLC23A2_chr20_4847358_5006510	0/0	c0010	1953	2	2	0	0	0	0	copy fasta	SLC23A2	chr20	4847358	5006510
SLC23A2_chr20_4847358_5006510	0/0	c0011	1953	2	2	0	0	0	0	copy fasta	SLC23A2	chr20	4847358	5006510
SLC23A2_chr20_4847358_5006510	0/0	c0012	1953	2	2	0	0	0	0	copy fasta	SLC23A2	chr20	4847358	5006510
SLC23A2_chr20_4847358_5006510	0/0	c0013	1953	2	2	0	0	0	0	copy fasta	SLC23A2	chr20	4847358	5006510
SLC23A2_chr20_4847358_5006510	0/0	c0014	1953	1	1	0	0	0	0	copy fasta	SLC23A2	chr20	4847358	5006510
SLC23A2_chr20_4847358_5006510	0/0	c0015	1953	1	1	0	0	0	0	copy fasta	SLC23A2	chr20	4847358	5006510
SLC23A2_chr20_4847358_5006510	0/0	c0016	1953	1	0	0	1	0	0	copy fasta	SLC23A2	chr20	4847358	5006510
SLC23A2_chr20_4847358_5006510	0/0	c0017	1953	1	1	0	0	0	0	copy fasta	SLC23A2	chr20	4847358	5006510
SLC23A2_chr20_4847358_5006510	0/0	c0018	1953	1	1	0	0	0	0	copy fasta	SLC23A2	chr20	4847358	5006510
SLC23A2_chr20_4847358_5006510	0/0	c0019	1953	1	1	0	0	0	0	copy fasta	SLC23A2	chr20	4847358	5006510
SLC23A2_chr20_4847358_5006510	0/0	c0020	1953	1	1	0	0	0	0	copy fasta	SLC23A2	chr20	4847358	5006510
SLC23A2_chr20_4847358_5006510	0/0	c0021	1953	1	1	0	0	0	0	copy fasta	SLC23A2	chr20	4847358	5006510
SLC23A2_chr20_4847358_5006510	0/0	c0022	1953	1	1	0	0	0	0	copy fasta	SLC23A2	chr20	4847358	5006510
SLC23A2_chr20_4847358_5006510	0/0	c0023	1953	1	0	0	0	0	1	copy fasta	SLC23A2	chr20	4847358	5006510
SLC23A2_chr20_4847358_5006510	0/0	c0024	1953	1	1	0	0	0	0	copy fasta	SLC23A2	chr20	4847358	5006510
SLC23A3_chr2_219156465_219175029	1/1	c0001	1833	419	93	68	201	12	43	copy fasta	SLC23A3	chr2	219156465	219175029
SLC23A3_chr2_219156465_219175029	0/0	c0002	1833	6	4	2	0	0	0	copy fasta	SLC23A3	chr2	219156465	219175029
SLC23A3_chr2_219156465_219175029	0/0	c0003	1833	2	0	0	0	0	2	copy fasta	SLC23A3	chr2	219156465	219175029
SLC23A3_chr2_219156465_219175029	0/0	c0004	1833	1	0	1	0	0	0	copy fasta	SLC23A3	chr2	219156465	219175029
SLC23A3_chr2_219156465_219175029	0/0	c0005	1833	1	0	0	0	0	1	copy fasta	SLC23A3	chr2	219156465	219175029
SLC23A3_chr2_219156465_219175029	0/0	c0006	1833	1	1	0	0	0	0	copy fasta	SLC23A3	chr2	219156465	219175029
SLC23A3_chr2_219156465_219175029	0/0	c0007	1833	1	0	1	0	0	0	copy fasta	SLC23A3	chr2	219156465	219175029
SLC23A3_chr2_219156465_219175029	0/0	c0008	1833	1	0	0	1	0	0	copy fasta	SLC23A3	chr2	219156465	219175029
SLC23A3_chr2_219156465_219175029	0/0	c0009	1833	1	0	0	1	0	0	copy fasta	SLC23A3	chr2	219156465	219175029
SLC23A3_chr2_219156465_219175029	0/0	c0010	1833	1	0	0	1	0	0	copy fasta	SLC23A3	chr2	219156465	219175029
SLC24A1_chr15_65616938_65661260	1/1	c0001	3300	176	53	35	57	11	18	copy fasta	SLC24A1	chr15	65616938	65661260
SLC24A1_chr15_65616938_65661260	0/0	c0002	3300	96	12	11	64	1	8	copy fasta	SLC24A1	chr15	65616938	65661260
SLC24A1_chr15_65616938_65661260	0/0	c0003	3300	22	7	5	6	0	4	copy fasta	SLC24A1	chr15	65616938	65661260
SLC24A1_chr15_65616938_65661260	0/0	c0004	3300	5	5	0	0	0	0	copy fasta	SLC24A1	chr15	65616938	65661260
SLC24A1_chr15_65616938_65661260	0/0	c0005	3300	4	4	0	0	0	0	copy fasta	SLC24A1	chr15	65616938	65661260
SLC24A1_chr15_65616938_65661260	0/0	c0006	3300	3	3	0	0	0	0	copy fasta	SLC24A1	chr15	65616938	65661260
SLC24A1_chr15_65616938_65661260	0/0	c0007	3300	2	0	0	0	2	0	copy fasta	SLC24A1	chr15	65616938	65661260
SLC24A1_chr15_65616938_65661260	0/0	c0008	3273	2	1	0	0	0	1	copy fasta	SLC24A1	chr15	65616938	65661260
SLC24A1_chr15_65616938_65661260	0/0	c0009	3300	2	0	0	0	0	2	copy fasta	SLC24A1	chr15	65616938	65661260
SLC24A1_chr15_65616938_65661260	0/0	c0010	3300	2	0	0	2	0	0	copy fasta	SLC24A1	chr15	65616938	65661260
SLC24A1_chr15_65616938_65661260	0/0	c0011	3300	1	0	0	1	0	0	copy fasta	SLC24A1	chr15	65616938	65661260
SLC24A1_chr15_65616938_65661260	0/0	c0012	3300	1	0	0	0	0	1	copy fasta	SLC24A1	chr15	65616938	65661260
SLC24A1_chr15_65616938_65661260	0/0	c0013	3300	1	0	0	0	0	1	copy fasta	SLC24A1	chr15	65616938	65661260
SLC24A1_chr15_65616938_65661260	0/0	c0014	3300	1	0	0	1	0	0	copy fasta	SLC24A1	chr15	65616938	65661260