JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SLC24A1_chr15_65616938_65661260	0/0	c0015	3300	1	1	0	0	0	0	copy fasta	SLC24A1	chr15	65616938	65661260
SLC24A1_chr15_65616938_65661260	0/0	c0016	3300	1	0	1	0	0	0	copy fasta	SLC24A1	chr15	65616938	65661260
SLC24A1_chr15_65616938_65661260	0/0	c0017	3300	1	0	0	1	0	0	copy fasta	SLC24A1	chr15	65616938	65661260
SLC24A1_chr15_65616938_65661260	0/0	c0018	3300	1	0	0	1	0	0	copy fasta	SLC24A1	chr15	65616938	65661260
SLC24A1_chr15_65616938_65661260	0/0	c0019	3300	1	0	0	0	0	1	copy fasta	SLC24A1	chr15	65616938	65661260
SLC24A1_chr15_65616938_65661260	0/0	c0020	3300	1	0	0	1	0	0	copy fasta	SLC24A1	chr15	65616938	65661260
SLC24A2_chr9_19502455_19794037	0/1	c0001	1986	82	26	14	20	4	17	copy fasta	SLC24A2	chr9	19502455	19794037
SLC24A2_chr9_19502455_19794037	0/0	c0002	1986	30	13	3	6	4	4	copy fasta	SLC24A2	chr9	19502455	19794037
SLC24A2_chr9_19502455_19794037	0/0	c0003	1986	15	3	2	9	0	1	copy fasta	SLC24A2	chr9	19502455	19794037
SLC24A2_chr9_19502455_19794037	1/0	c0004	1986	10	1	4	0	3	1	copy fasta	SLC24A2	chr9	19502455	19794037
SLC24A2_chr9_19502455_19794037	0/0	c0005	1986	10	4	0	6	0	0	copy fasta	SLC24A2	chr9	19502455	19794037
SLC24A2_chr9_19502455_19794037	0/0	c0006	1986	8	4	3	0	1	0	copy fasta	SLC24A2	chr9	19502455	19794037
SLC24A2_chr9_19502455_19794037	0/0	c0007	1986	5	5	0	0	0	0	copy fasta	SLC24A2	chr9	19502455	19794037
SLC24A2_chr9_19502455_19794037	0/0	c0008	1986	4	4	0	0	0	0	copy fasta	SLC24A2	chr9	19502455	19794037
SLC24A2_chr9_19502455_19794037	0/0	c0009	1986	3	3	0	0	0	0	copy fasta	SLC24A2	chr9	19502455	19794037
SLC24A2_chr9_19502455_19794037	0/0	c0010	1986	2	2	0	0	0	0	copy fasta	SLC24A2	chr9	19502455	19794037
SLC24A2_chr9_19502455_19794037	0/0	c0011	1986	2	2	0	0	0	0	copy fasta	SLC24A2	chr9	19502455	19794037
SLC24A2_chr9_19502455_19794037	0/0	c0012	1986	2	2	0	0	0	0	copy fasta	SLC24A2	chr9	19502455	19794037
SLC24A2_chr9_19502455_19794037	0/0	c0013	1986	1	1	0	0	0	0	copy fasta	SLC24A2	chr9	19502455	19794037
SLC24A2_chr9_19502455_19794037	0/0	c0014	1986	1	0	1	0	0	0	copy fasta	SLC24A2	chr9	19502455	19794037
SLC24A2_chr9_19502455_19794037	0/0	c0015	1986	1	0	0	0	0	1	copy fasta	SLC24A2	chr9	19502455	19794037
SLC24A2_chr9_19502455_19794037	0/0	c0016	1986	1	0	1	0	0	0	copy fasta	SLC24A2	chr9	19502455	19794037
SLC24A2_chr9_19502455_19794037	0/0	c0017	1986	1	1	0	0	0	0	copy fasta	SLC24A2	chr9	19502455	19794037
SLC24A2_chr9_19502455_19794037	0/0	c0018	1986	1	1	0	0	0	0	copy fasta	SLC24A2	chr9	19502455	19794037
SLC24A2_chr9_19502455_19794037	0/0	c0019	1986	1	0	1	0	0	0	copy fasta	SLC24A2	chr9	19502455	19794037
SLC24A2_chr9_19502455_19794037	0/0	c0020	1986	1	1	0	0	0	0	copy fasta	SLC24A2	chr9	19502455	19794037
SLC24A2_chr9_19502455_19794037	0/0	c0021	1986	1	1	0	0	0	0	copy fasta	SLC24A2	chr9	19502455	19794037
SLC24A2_chr9_19502455_19794037	0/0	c0022	1986	1	0	0	1	0	0	copy fasta	SLC24A2	chr9	19502455	19794037
SLC24A2_chr9_19502455_19794037	0/0	c0023	1986	1	0	1	0	0	0	copy fasta	SLC24A2	chr9	19502455	19794037
SLC24A2_chr9_19502455_19794037	0/0	c0024	1986	1	1	0	0	0	0	copy fasta	SLC24A2	chr9	19502455	19794037
SLC24A2_chr9_19502455_19794037	0/0	c0025	1986	1	1	0	0	0	0	copy fasta	SLC24A2	chr9	19502455	19794037
SLC24A2_chr9_19502455_19794037	0/0	c0026	1986	1	1	0	0	0	0	copy fasta	SLC24A2	chr9	19502455	19794037
SLC24A2_chr9_19502455_19794037	0/0	c0027	1986	1	1	0	0	0	0	copy fasta	SLC24A2	chr9	19502455	19794037
SLC24A3_chr20_19207642_19727926	0/0	c0001	1935	28	16	9	2	1	0	copy fasta	SLC24A3	chr20	19207642	19727926
SLC24A3_chr20_19207642_19727926	0/0	c0002	1935	24	9	11	2	1	1	copy fasta	SLC24A3	chr20	19207642	19727926
SLC24A3_chr20_19207642_19727926	0/0	c0003	1935	23	6	7	3	1	6	copy fasta	SLC24A3	chr20	19207642	19727926
SLC24A3_chr20_19207642_19727926	0/0	c0004	1935	21	15	4	0	1	1	copy fasta	SLC24A3	chr20	19207642	19727926
SLC24A3_chr20_19207642_19727926	0/0	c0005	1935	15	12	1	0	0	2	copy fasta	SLC24A3	chr20	19207642	19727926
SLC24A3_chr20_19207642_19727926	0/0	c0006	1935	13	4	4	4	0	1	copy fasta	SLC24A3	chr20	19207642	19727926
SLC24A3_chr20_19207642_19727926	0/0	c0007	1935	8	1	1	4	0	2	copy fasta	SLC24A3	chr20	19207642	19727926
SLC24A3_chr20_19207642_19727926	0/0	c0008	1935	6	5	1	0	0	0	copy fasta	SLC24A3	chr20	19207642	19727926
SLC24A3_chr20_19207642_19727926	0/0	c0009	1935	3	2	1	0	0	0	copy fasta	SLC24A3	chr20	19207642	19727926
SLC24A3_chr20_19207642_19727926	0/0	c0010	1935	2	0	0	2	0	0	copy fasta	SLC24A3	chr20	19207642	19727926
SLC24A3_chr20_19207642_19727926	0/0	c0011	1935	2	0	1	0	0	1	copy fasta	SLC24A3	chr20	19207642	19727926
SLC24A3_chr20_19207642_19727926	0/0	c0012	1935	2	0	0	2	0	0	copy fasta	SLC24A3	chr20	19207642	19727926
SLC24A3_chr20_19207642_19727926	0/0	c0013	1935	2	1	1	0	0	0	copy fasta	SLC24A3	chr20	19207642	19727926
SLC24A3_chr20_19207642_19727926	0/0	c0014	1935	2	1	0	0	0	1	copy fasta	SLC24A3	chr20	19207642	19727926
SLC24A3_chr20_19207642_19727926	0/0	c0015	1935	1	0	1	0	0	0	copy fasta	SLC24A3	chr20	19207642	19727926
SLC24A3_chr20_19207642_19727926	0/0	c0016	1935	1	0	0	1	0	0	copy fasta	SLC24A3	chr20	19207642	19727926
SLC24A3_chr20_19207642_19727926	0/0	c0017	1935	1	0	0	0	0	1	copy fasta	SLC24A3	chr20	19207642	19727926