JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SLC24A3_chr20_19207642_19727926	0/0	c0018	1935	1	1	0	0	0	0	copy fasta	SLC24A3	chr20	19207642	19727926
SLC24A3_chr20_19207642_19727926	0/0	c0019	1935	1	1	0	0	0	0	copy fasta	SLC24A3	chr20	19207642	19727926
SLC24A3_chr20_19207642_19727926	0/0	c0020	1935	1	0	0	0	0	1	copy fasta	SLC24A3	chr20	19207642	19727926
SLC24A3_chr20_19207642_19727926	0/0	c0021	1935	1	0	0	0	0	1	copy fasta	SLC24A3	chr20	19207642	19727926
SLC24A3_chr20_19207642_19727926	0/0	c0022	1935	1	1	0	0	0	0	copy fasta	SLC24A3	chr20	19207642	19727926
SLC24A3_chr20_19207642_19727926	0/0	c0023	1935	1	1	0	0	0	0	copy fasta	SLC24A3	chr20	19207642	19727926
SLC24A4_chr14_92318165_92506481	0/0	c0001	1869	97	25	14	40	2	16	copy fasta	SLC24A4	chr14	92318165	92506481
SLC24A4_chr14_92318165_92506481	0/0	c0002	1869	56	11	20	13	4	8	copy fasta	SLC24A4	chr14	92318165	92506481
SLC24A4_chr14_92318165_92506481	0/1	c0003	1869	24	1	13	2	5	2	copy fasta	SLC24A4	chr14	92318165	92506481
SLC24A4_chr14_92318165_92506481	0/0	c0004	1869	22	2	9	2	3	6	copy fasta	SLC24A4	chr14	92318165	92506481
SLC24A4_chr14_92318165_92506481	0/0	c0005	1869	9	3	0	6	0	0	copy fasta	SLC24A4	chr14	92318165	92506481
SLC24A4_chr14_92318165_92506481	0/0	c0006	1869	6	6	0	0	0	0	copy fasta	SLC24A4	chr14	92318165	92506481
SLC24A4_chr14_92318165_92506481	0/0	c0007	1869	6	0	0	5	1	0	copy fasta	SLC24A4	chr14	92318165	92506481
SLC24A4_chr14_92318165_92506481	0/0	c0008	1869	5	5	0	0	0	0	copy fasta	SLC24A4	chr14	92318165	92506481
SLC24A4_chr14_92318165_92506481	0/0	c0009	1869	5	5	0	0	0	0	copy fasta	SLC24A4	chr14	92318165	92506481
SLC24A4_chr14_92318165_92506481	0/0	c0010	1869	5	1	3	0	0	1	copy fasta	SLC24A4	chr14	92318165	92506481
SLC24A4_chr14_92318165_92506481	0/0	c0011	1869	4	0	3	1	0	0	copy fasta	SLC24A4	chr14	92318165	92506481
SLC24A4_chr14_92318165_92506481	0/0	c0012	1869	4	4	0	0	0	0	copy fasta	SLC24A4	chr14	92318165	92506481
SLC24A4_chr14_92318165_92506481	0/0	c0013	1869	3	0	0	0	3	0	copy fasta	SLC24A4	chr14	92318165	92506481
SLC24A4_chr14_92318165_92506481	0/0	c0014	1869	3	3	0	0	0	0	copy fasta	SLC24A4	chr14	92318165	92506481
SLC24A4_chr14_92318165_92506481	0/0	c0015	1869	3	3	0	0	0	0	copy fasta	SLC24A4	chr14	92318165	92506481
SLC24A4_chr14_92318165_92506481	0/0	c0016	1869	2	2	0	0	0	0	copy fasta	SLC24A4	chr14	92318165	92506481
SLC24A4_chr14_92318165_92506481	0/0	c0017	1869	2	0	1	0	0	1	copy fasta	SLC24A4	chr14	92318165	92506481
SLC24A4_chr14_92318165_92506481	0/0	c0018	1869	2	2	0	0	0	0	copy fasta	SLC24A4	chr14	92318165	92506481
SLC24A4_chr14_92318165_92506481	0/0	c0019	1869	2	2	0	0	0	0	copy fasta	SLC24A4	chr14	92318165	92506481
SLC24A4_chr14_92318165_92506481	0/0	c0020	1869	2	2	0	0	0	0	copy fasta	SLC24A4	chr14	92318165	92506481
SLC24A4_chr14_92318165_92506481	0/0	c0021	1869	1	1	0	0	0	0	copy fasta	SLC24A4	chr14	92318165	92506481
SLC24A4_chr14_92318165_92506481	0/0	c0022	1869	1	1	0	0	0	0	copy fasta	SLC24A4	chr14	92318165	92506481
SLC24A4_chr14_92318165_92506481	0/0	c0023	1869	1	1	0	0	0	0	copy fasta	SLC24A4	chr14	92318165	92506481
SLC24A4_chr14_92318165_92506481	0/0	c0024	1869	1	0	1	0	0	0	copy fasta	SLC24A4	chr14	92318165	92506481
SLC24A4_chr14_92318165_92506481	0/0	c0025	1869	1	1	0	0	0	0	copy fasta	SLC24A4	chr14	92318165	92506481
SLC24A4_chr14_92318165_92506481	0/0	c0026	1869	1	1	0	0	0	0	copy fasta	SLC24A4	chr14	92318165	92506481
SLC24A4_chr14_92318165_92506481	0/0	c0027	1869	1	1	0	0	0	0	copy fasta	SLC24A4	chr14	92318165	92506481
SLC24A4_chr14_92318165_92506481	0/0	c0028	1869	1	0	0	1	0	0	copy fasta	SLC24A4	chr14	92318165	92506481
SLC24A4_chr14_92318165_92506481	0/0	c0029	1869	1	1	0	0	0	0	copy fasta	SLC24A4	chr14	92318165	92506481
SLC24A4_chr14_92318165_92506481	0/0	c0030	1869	1	1	0	0	0	0	copy fasta	SLC24A4	chr14	92318165	92506481
SLC24A4_chr14_92318165_92506481	0/0	c0031	1869	1	0	1	0	0	0	copy fasta	SLC24A4	chr14	92318165	92506481
SLC24A4_chr14_92318165_92506481	0/0	c0032	1869	1	1	0	0	0	0	copy fasta	SLC24A4	chr14	92318165	92506481
SLC24A4_chr14_92318165_92506481	0/0	c0033	1869	1	0	1	0	0	0	copy fasta	SLC24A4	chr14	92318165	92506481
SLC24A4_chr14_92318165_92506481	0/0	c0034	1869	1	1	0	0	0	0	copy fasta	SLC24A4	chr14	92318165	92506481
SLC24A4_chr14_92318165_92506481	0/0	c0035	1869	1	1	0	0	0	0	copy fasta	SLC24A4	chr14	92318165	92506481
SLC24A4_chr14_92318165_92506481	0/0	c0036	1869	1	1	0	0	0	0	copy fasta	SLC24A4	chr14	92318165	92506481
SLC24A4_chr14_92318165_92506481	0/0	c0037	1869	1	1	0	0	0	0	copy fasta	SLC24A4	chr14	92318165	92506481
SLC24A4_chr14_92318165_92506481	1/0	c0038	1869	1	0	0	0	0	0	copy fasta	SLC24A4	chr14	92318165	92506481
SLC24A4_chr14_92318165_92506481	0/0	c0039	1869	1	1	0	0	0	0	copy fasta	SLC24A4	chr14	92318165	92506481
SLC24A4_chr14_92318165_92506481	0/0	c0040	1869	1	1	0	0	0	0	copy fasta	SLC24A4	chr14	92318165	92506481
SLC24A5_chr15_48115990_48147672	0/0	c0001	1503	292	78	29	174	0	11	copy fasta	SLC24A5	chr15	48115990	48147672
SLC24A5_chr15_48115990_48147672	1/1	c0002	1503	47	7	20	1	4	13	copy fasta	SLC24A5	chr15	48115990	48147672
SLC24A5_chr15_48115990_48147672	0/0	c0003	1503	1	0	0	1	0	0	copy fasta	SLC24A5	chr15	48115990	48147672
SLC24A5_chr15_48115990_48147672	0/0	c0004	1503	1	0	1	0	0	0	copy fasta	SLC24A5	chr15	48115990	48147672