JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SLC24A5_chr15_48115990_48147672	0/0	c0005	1503	1	1	0	0	0	0	copy fasta	SLC24A5	chr15	48115990	48147672
SLC24A5_chr15_48115990_48147672	0/0	c0006	1503	1	1	0	0	0	0	copy fasta	SLC24A5	chr15	48115990	48147672
SLC24A5_chr15_48115990_48147672	0/0	c0007	1503	1	1	0	0	0	0	copy fasta	SLC24A5	chr15	48115990	48147672
SLC25A10_chr17_81707284_81726012	1/0	c0001	864	231	45	46	104	8	27	copy fasta	SLC25A10	chr17	81707284	81726012
SLC25A10_chr17_81707284_81726012	0/0	c0002	864	168	42	30	70	6	20	copy fasta	SLC25A10	chr17	81707284	81726012
SLC25A10_chr17_81707284_81726012	0/1	c0003	864	8	0	4	0	2	1	copy fasta	SLC25A10	chr17	81707284	81726012
SLC25A10_chr17_81707284_81726012	0/0	c0004	864	3	3	0	0	0	0	copy fasta	SLC25A10	chr17	81707284	81726012
SLC25A10_chr17_81707284_81726012	0/0	c0005	864	1	0	0	0	0	1	copy fasta	SLC25A10	chr17	81707284	81726012
SLC25A10_chr17_81707284_81726012	0/0	c0006	864	1	0	0	1	0	0	copy fasta	SLC25A10	chr17	81707284	81726012
SLC25A10_chr17_81707284_81726012	0/0	c0007	864	1	0	0	1	0	0	copy fasta	SLC25A10	chr17	81707284	81726012
SLC25A10_chr17_81707284_81726012	0/0	c0008	864	1	0	0	0	0	1	copy fasta	SLC25A10	chr17	81707284	81726012
SLC25A11_chr17_4932130_4945046	1/1	c0001	945	433	89	80	200	14	48	copy fasta	SLC25A11	chr17	4932130	4945046
SLC25A11_chr17_4932130_4945046	0/0	c0002	945	1	1	0	0	0	0	copy fasta	SLC25A11	chr17	4932130	4945046
SLC25A12_chr2_171778405_171899244	0/1	c0001	2037	240	36	47	126	6	24	copy fasta	SLC25A12	chr2	171778405	171899244
SLC25A12_chr2_171778405_171899244	1/0	c0002	2037	63	31	7	13	2	9	copy fasta	SLC25A12	chr2	171778405	171899244
SLC25A12_chr2_171778405_171899244	0/0	c0003	2037	3	0	1	0	0	2	copy fasta	SLC25A12	chr2	171778405	171899244
SLC25A12_chr2_171778405_171899244	0/0	c0004	2037	2	2	0	0	0	0	copy fasta	SLC25A12	chr2	171778405	171899244
SLC25A12_chr2_171778405_171899244	0/0	c0005	2037	1	0	1	0	0	0	copy fasta	SLC25A12	chr2	171778405	171899244
SLC25A12_chr2_171778405_171899244	0/0	c0006	2037	1	0	0	1	0	0	copy fasta	SLC25A12	chr2	171778405	171899244
SLC25A12_chr2_171778405_171899244	0/0	c0007	2037	1	0	0	0	0	1	copy fasta	SLC25A12	chr2	171778405	171899244
SLC25A12_chr2_171778405_171899244	0/0	c0008	2037	1	0	0	1	0	0	copy fasta	SLC25A12	chr2	171778405	171899244
SLC25A12_chr2_171778405_171899244	0/0	c0009	2037	1	0	0	1	0	0	copy fasta	SLC25A12	chr2	171778405	171899244
SLC25A12_chr2_171778405_171899244	0/0	c0010	2037	1	1	0	0	0	0	copy fasta	SLC25A12	chr2	171778405	171899244
SLC25A13_chr7_96115220_96327098	1/0	c0001	2028	137	49	21	52	2	12	copy fasta	SLC25A13	chr7	96115220	96327098
SLC25A13_chr7_96115220_96327098	0/1	c0002	2028	121	18	17	72	2	11	copy fasta	SLC25A13	chr7	96115220	96327098
SLC25A13_chr7_96115220_96327098	0/0	c0003	2028	4	4	0	0	0	0	copy fasta	SLC25A13	chr7	96115220	96327098
SLC25A13_chr7_96115220_96327098	0/0	c0004	2028	4	4	0	0	0	0	copy fasta	SLC25A13	chr7	96115220	96327098
SLC25A13_chr7_96115220_96327098	0/0	c0005	2028	3	3	0	0	0	0	copy fasta	SLC25A13	chr7	96115220	96327098
SLC25A13_chr7_96115220_96327098	0/0	c0006	2028	1	1	0	0	0	0	copy fasta	SLC25A13	chr7	96115220	96327098
SLC25A13_chr7_96115220_96327098	0/0	c0007	2028	1	1	0	0	0	0	copy fasta	SLC25A13	chr7	96115220	96327098
SLC25A13_chr7_96115220_96327098	0/0	c0008	2028	1	0	0	0	0	1	copy fasta	SLC25A13	chr7	96115220	96327098
SLC25A13_chr7_96115220_96327098	0/0	c0009	2028	1	0	0	1	0	0	copy fasta	SLC25A13	chr7	96115220	96327098
SLC25A13_chr7_96115220_96327098	0/0	c0010	2028	1	1	0	0	0	0	copy fasta	SLC25A13	chr7	96115220	96327098
SLC25A13_chr7_96115220_96327098	0/0	c0011	2028	1	0	0	1	0	0	copy fasta	SLC25A13	chr7	96115220	96327098
SLC25A13_chr7_96115220_96327098	0/0	c0012	2028	1	1	0	0	0	0	copy fasta	SLC25A13	chr7	96115220	96327098
SLC25A14_chrX_130334919_130378357	1/1	c0001	978	288	77	52	118	13	26	copy fasta	SLC25A14	chrX	130334919	130378357
SLC25A14_chrX_130334919_130378357	0/0	c0002	979	1	0	0	1	0	0	copy fasta	SLC25A14	chrX	130334919	130378357
SLC25A14_chrX_130334919_130378357	0/0	c0003	978	1	0	0	1	0	0	copy fasta	SLC25A14	chrX	130334919	130378357
SLC25A14_chrX_130334919_130378357	0/0	c0004	978	1	1	0	0	0	0	copy fasta	SLC25A14	chrX	130334919	130378357
SLC25A15_chr13_40784611_40817460	1/1	c0001	906	259	53	42	127	8	27	copy fasta	SLC25A15	chr13	40784611	40817460
SLC25A15_chr13_40784611_40817460	0/0	c0002	906	121	18	34	53	8	8	copy fasta	SLC25A15	chr13	40784611	40817460
SLC25A15_chr13_40784611_40817460	0/0	c0003	906	20	10	1	7	0	2	copy fasta	SLC25A15	chr13	40784611	40817460
SLC25A15_chr13_40784611_40817460	0/0	c0004	906	12	8	3	1	0	0	copy fasta	SLC25A15	chr13	40784611	40817460
SLC25A15_chr13_40784611_40817460	0/0	c0005	906	1	0	1	0	0	0	copy fasta	SLC25A15	chr13	40784611	40817460
SLC25A15_chr13_40784611_40817460	0/0	c0006	906	1	0	0	0	0	1	copy fasta	SLC25A15	chr13	40784611	40817460
SLC25A15_chr13_40784611_40817460	0/0	c0007	906	1	0	1	0	0	0	copy fasta	SLC25A15	chr13	40784611	40817460
SLC25A15_chr13_40784611_40817460	0/0	c0008	860	1	1	0	0	0	0	copy fasta	SLC25A15	chr13	40784611	40817460
SLC25A16_chr10_68472998_68532523	1/1	c0001	999	310	81	55	118	10	44	copy fasta	SLC25A16	chr10	68472998	68532523
SLC25A16_chr10_68472998_68532523	0/0	c0002	999	1	1	0	0	0	0	copy fasta	SLC25A16	chr10	68472998	68532523
SLC25A16_chr10_68472998_68532523	0/0	c0003	999	1	0	1	0	0	0	copy fasta	SLC25A16	chr10	68472998	68532523