JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ATP2C2_chr16_84363538_84469187	0/0	c0027	2841	2	2	0	0	0	0	copy fasta	ATP2C2	chr16	84363538	84469187
ATP2C2_chr16_84363538_84469187	1/0	c0028	2841	2	1	0	0	0	0	copy fasta	ATP2C2	chr16	84363538	84469187
ATP2C2_chr16_84363538_84469187	0/0	c0029	2847	2	2	0	0	0	0	copy fasta	ATP2C2	chr16	84363538	84469187
ATP2C2_chr16_84363538_84469187	0/0	c0030	2841	2	0	0	2	0	0	copy fasta	ATP2C2	chr16	84363538	84469187
ATP2C2_chr16_84363538_84469187	0/0	c0031	2841	2	0	0	1	0	1	copy fasta	ATP2C2	chr16	84363538	84469187
ATP2C2_chr16_84363538_84469187	0/0	c0032	2841	1	0	1	0	0	0	copy fasta	ATP2C2	chr16	84363538	84469187
ATP2C2_chr16_84363538_84469187	0/0	c0033	2841	1	1	0	0	0	0	copy fasta	ATP2C2	chr16	84363538	84469187
ATP2C2_chr16_84363538_84469187	0/0	c0034	2841	1	1	0	0	0	0	copy fasta	ATP2C2	chr16	84363538	84469187
ATP2C2_chr16_84363538_84469187	0/0	c0035	2841	1	1	0	0	0	0	copy fasta	ATP2C2	chr16	84363538	84469187
ATP2C2_chr16_84363538_84469187	0/0	c0036	2841	1	1	0	0	0	0	copy fasta	ATP2C2	chr16	84363538	84469187
ATP2C2_chr16_84363538_84469187	0/0	c0037	2841	1	1	0	0	0	0	copy fasta	ATP2C2	chr16	84363538	84469187
ATP2C2_chr16_84363538_84469187	0/0	c0038	2841	1	0	1	0	0	0	copy fasta	ATP2C2	chr16	84363538	84469187
ATP2C2_chr16_84363538_84469187	0/0	c0039	2841	1	0	0	1	0	0	copy fasta	ATP2C2	chr16	84363538	84469187
ATP2C2_chr16_84363538_84469187	0/0	c0040	2841	1	1	0	0	0	0	copy fasta	ATP2C2	chr16	84363538	84469187
ATP2C2_chr16_84363538_84469187	0/0	c0041	2841	1	1	0	0	0	0	copy fasta	ATP2C2	chr16	84363538	84469187
ATP2C2_chr16_84363538_84469187	0/0	c0042	2841	1	1	0	0	0	0	copy fasta	ATP2C2	chr16	84363538	84469187
ATP2C2_chr16_84363538_84469187	0/0	c0043	2841	1	0	0	1	0	0	copy fasta	ATP2C2	chr16	84363538	84469187
ATP2C2_chr16_84363538_84469187	0/0	c0044	2841	1	0	0	1	0	0	copy fasta	ATP2C2	chr16	84363538	84469187
ATP2C2_chr16_84363538_84469187	0/0	c0045	2841	1	0	0	1	0	0	copy fasta	ATP2C2	chr16	84363538	84469187
ATP2C2_chr16_84363538_84469187	0/0	c0046	2841	1	0	0	1	0	0	copy fasta	ATP2C2	chr16	84363538	84469187
ATP2C2_chr16_84363538_84469187	0/0	c0047	2841	1	0	1	0	0	0	copy fasta	ATP2C2	chr16	84363538	84469187
ATP2C2_chr16_84363538_84469187	0/0	c0048	2841	1	0	0	1	0	0	copy fasta	ATP2C2	chr16	84363538	84469187
ATP2C2_chr16_84363538_84469187	0/0	c0049	2841	1	1	0	0	0	0	copy fasta	ATP2C2	chr16	84363538	84469187
ATP2C2_chr16_84363538_84469187	0/0	c0050	2847	1	1	0	0	0	0	copy fasta	ATP2C2	chr16	84363538	84469187
ATP2C2_chr16_84363538_84469187	0/0	c0051	2841	1	0	0	0	0	1	copy fasta	ATP2C2	chr16	84363538	84469187
ATP2C2_chr16_84363538_84469187	0/0	c0052	2841	1	0	0	1	0	0	copy fasta	ATP2C2	chr16	84363538	84469187
ATP2C2_chr16_84363538_84469187	0/0	c0053	2841	1	1	0	0	0	0	copy fasta	ATP2C2	chr16	84363538	84469187
ATP2C2_chr16_84363538_84469187	0/0	c0054	2841	1	1	0	0	0	0	copy fasta	ATP2C2	chr16	84363538	84469187
ATP2C2_chr16_84363538_84469187	0/0	c0055	2841	1	0	0	1	0	0	copy fasta	ATP2C2	chr16	84363538	84469187
ATP2C2_chr16_84363538_84469187	0/0	c0056	2841	1	0	0	0	1	0	copy fasta	ATP2C2	chr16	84363538	84469187
ATP2C2_chr16_84363538_84469187	0/0	c0057	2841	1	0	1	0	0	0	copy fasta	ATP2C2	chr16	84363538	84469187
ATP2C2_chr16_84363538_84469187	0/0	c0058	2841	1	1	0	0	0	0	copy fasta	ATP2C2	chr16	84363538	84469187
ATP2C2_chr16_84363538_84469187	0/0	c0059	2841	1	1	0	0	0	0	copy fasta	ATP2C2	chr16	84363538	84469187
ATP2C2_chr16_84363538_84469187	0/0	c0060	2841	1	1	0	0	0	0	copy fasta	ATP2C2	chr16	84363538	84469187
ATP2C2_chr16_84363538_84469187	0/0	c0061	2841	1	0	0	1	0	0	copy fasta	ATP2C2	chr16	84363538	84469187
ATP2C2_chr16_84363538_84469187	0/0	c0062	2841	1	0	0	0	0	1	copy fasta	ATP2C2	chr16	84363538	84469187
ATP2C2_chr16_84363538_84469187	0/0	c0063	2841	1	0	0	1	0	0	copy fasta	ATP2C2	chr16	84363538	84469187
ATP2C2_chr16_84363538_84469187	0/0	c0064	2841	1	1	0	0	0	0	copy fasta	ATP2C2	chr16	84363538	84469187
ATP2C2_chr16_84363538_84469187	0/0	c0065	2841	1	0	0	1	0	0	copy fasta	ATP2C2	chr16	84363538	84469187
ATP2C2_chr16_84363538_84469187	0/0	c0066	2841	1	0	0	1	0	0	copy fasta	ATP2C2	chr16	84363538	84469187
ATP2C2_chr16_84363538_84469187	0/0	c0067	2841	1	1	0	0	0	0	copy fasta	ATP2C2	chr16	84363538	84469187
ATP2C2_chr16_84363538_84469187	0/0	c0068	2841	1	1	0	0	0	0	copy fasta	ATP2C2	chr16	84363538	84469187
ATP2C2_chr16_84363538_84469187	0/0	c0069	2841	1	0	0	1	0	0	copy fasta	ATP2C2	chr16	84363538	84469187
ATP2C2_chr16_84363538_84469187	0/0	c0070	2841	1	0	0	0	0	1	copy fasta	ATP2C2	chr16	84363538	84469187
ATP2C2_chr16_84363538_84469187	0/0	c0071	2841	1	1	0	0	0	0	copy fasta	ATP2C2	chr16	84363538	84469187
ATP2C2_chr16_84363538_84469187	0/0	c0072	2841	1	0	1	0	0	0	copy fasta	ATP2C2	chr16	84363538	84469187
ATP2C2_chr16_84363538_84469187	0/0	c0073	2841	1	0	0	0	1	0	copy fasta	ATP2C2	chr16	84363538	84469187
ATP2C2_chr16_84363538_84469187	0/0	c0074	2841	1	1	0	0	0	0	copy fasta	ATP2C2	chr16	84363538	84469187
ATP2C2_chr16_84363538_84469187	0/0	c0075	2841	1	0	0	0	0	1	copy fasta	ATP2C2	chr16	84363538	84469187
ATP2C2_chr16_84363538_84469187	0/0	c0076	2841	1	1	0	0	0	0	copy fasta	ATP2C2	chr16	84363538	84469187