JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SLC25A17_chr22_40764630_40824346	1/0	c0001	924	303	85	33	133	15	36	copy fasta	SLC25A17	chr22	40764630	40824346
SLC25A17_chr22_40764630_40824346	0/1	c0002	924	16	1	11	1	1	1	copy fasta	SLC25A17	chr22	40764630	40824346
SLC25A17_chr22_40764630_40824346	0/0	c0003	924	2	0	0	2	0	0	copy fasta	SLC25A17	chr22	40764630	40824346
SLC25A17_chr22_40764630_40824346	0/0	c0004	924	2	2	0	0	0	0	copy fasta	SLC25A17	chr22	40764630	40824346
SLC25A17_chr22_40764630_40824346	0/0	c0005	924	1	1	0	0	0	0	copy fasta	SLC25A17	chr22	40764630	40824346
SLC25A17_chr22_40764630_40824346	0/0	c0006	924	1	1	0	0	0	0	copy fasta	SLC25A17	chr22	40764630	40824346
SLC25A17_chr22_40764630_40824346	0/0	c0007	924	1	0	0	0	0	1	copy fasta	SLC25A17	chr22	40764630	40824346
SLC25A18_chr22_17558498_17595995	1/1	c0001	948	404	93	80	165	16	48	copy fasta	SLC25A18	chr22	17558498	17595995
SLC25A18_chr22_17558498_17595995	0/0	c0002	948	1	0	0	1	0	0	copy fasta	SLC25A18	chr22	17558498	17595995
SLC25A18_chr22_17558498_17595995	0/0	c0003	948	1	1	0	0	0	0	copy fasta	SLC25A18	chr22	17558498	17595995
SLC25A18_chr22_17558498_17595995	0/0	c0004	948	1	1	0	0	0	0	copy fasta	SLC25A18	chr22	17558498	17595995
SLC25A18_chr22_17558498_17595995	0/0	c0005	948	1	1	0	0	0	0	copy fasta	SLC25A18	chr22	17558498	17595995
SLC25A18_chr22_17558498_17595995	0/0	c0006	948	1	0	0	1	0	0	copy fasta	SLC25A18	chr22	17558498	17595995
SLC25A18_chr22_17558498_17595995	0/0	c0007	948	1	0	0	1	0	0	copy fasta	SLC25A18	chr22	17558498	17595995
SLC25A19_chr17_75267992_75294433	0/0	c0001	963	173	9	32	98	10	24	copy fasta	SLC25A19	chr17	75267992	75294433
SLC25A19_chr17_75267992_75294433	0/1	c0002	963	119	65	20	11	8	14	copy fasta	SLC25A19	chr17	75267992	75294433
SLC25A19_chr17_75267992_75294433	1/0	c0003	963	46	18	9	11	0	7	copy fasta	SLC25A19	chr17	75267992	75294433
SLC25A19_chr17_75267992_75294433	0/0	c0004	963	3	2	1	0	0	0	copy fasta	SLC25A19	chr17	75267992	75294433
SLC25A19_chr17_75267992_75294433	0/0	c0005	963	2	0	0	1	0	1	copy fasta	SLC25A19	chr17	75267992	75294433
SLC25A19_chr17_75267992_75294433	0/0	c0006	963	1	0	0	1	0	0	copy fasta	SLC25A19	chr17	75267992	75294433
SLC25A1_chr22_19170581_19183736	1/1	c0001	936	386	94	70	163	17	40	copy fasta	SLC25A1	chr22	19170581	19183736
SLC25A1_chr22_19170581_19183736	0/0	c0002	936	35	1	9	20	1	4	copy fasta	SLC25A1	chr22	19170581	19183736
SLC25A1_chr22_19170581_19183736	0/0	c0003	936	1	0	0	1	0	0	copy fasta	SLC25A1	chr22	19170581	19183736
SLC25A1_chr22_19170581_19183736	0/0	c0004	936	1	0	1	0	0	0	copy fasta	SLC25A1	chr22	19170581	19183736
SLC25A1_chr22_19170581_19183736	0/0	c0005	936	1	1	0	0	0	0	copy fasta	SLC25A1	chr22	19170581	19183736
SLC25A20_chr3_48851926_48903882	1/1	c0001	906	192	82	36	44	12	16	copy fasta	SLC25A20	chr3	48851926	48903882
SLC25A20_chr3_48851926_48903882	0/0	c0002	906	1	1	0	0	0	0	copy fasta	SLC25A20	chr3	48851926	48903882
SLC25A20_chr3_48851926_48903882	0/0	c0003	906	1	1	0	0	0	0	copy fasta	SLC25A20	chr3	48851926	48903882
SLC25A21_chr14_36672921_37177606	0/0	c0001	900	132	60	26	33	2	11	copy fasta	SLC25A21	chr14	36672921	37177606
SLC25A21_chr14_36672921_37177606	0/0	c0002	900	22	4	1	14	0	3	copy fasta	SLC25A21	chr14	36672921	37177606
SLC25A21_chr14_36672921_37177606	0/0	c0003	900	6	5	1	0	0	0	copy fasta	SLC25A21	chr14	36672921	37177606
SLC25A21_chr14_36672921_37177606	0/0	c0004	900	1	1	0	0	0	0	copy fasta	SLC25A21	chr14	36672921	37177606
SLC25A21_chr14_36672921_37177606	0/0	c0005	900	1	1	0	0	0	0	copy fasta	SLC25A21	chr14	36672921	37177606
SLC25A21_chr14_36672921_37177606	0/0	c0006	900	1	0	0	1	0	0	copy fasta	SLC25A21	chr14	36672921	37177606
SLC25A21_chr14_36672921_37177606	0/0	c0007	900	1	1	0	0	0	0	copy fasta	SLC25A21	chr14	36672921	37177606
SLC25A22_chr11_785475_803281	1/1	c0001	972	350	78	68	155	10	37	copy fasta	SLC25A22	chr11	785475	803281
SLC25A22_chr11_785475_803281	0/0	c0002	972	16	1	2	10	1	2	copy fasta	SLC25A22	chr11	785475	803281
SLC25A22_chr11_785475_803281	0/0	c0003	972	14	12	2	0	0	0	copy fasta	SLC25A22	chr11	785475	803281
SLC25A22_chr11_785475_803281	0/0	c0004	972	11	0	0	9	0	2	copy fasta	SLC25A22	chr11	785475	803281
SLC25A22_chr11_785475_803281	0/0	c0005	972	8	2	5	0	1	0	copy fasta	SLC25A22	chr11	785475	803281
SLC25A22_chr11_785475_803281	0/0	c0006	972	2	2	0	0	0	0	copy fasta	SLC25A22	chr11	785475	803281
SLC25A22_chr11_785475_803281	0/0	c0007	972	2	2	0	0	0	0	copy fasta	SLC25A22	chr11	785475	803281
SLC25A22_chr11_785475_803281	0/0	c0008	972	1	0	0	1	0	0	copy fasta	SLC25A22	chr11	785475	803281
SLC25A22_chr11_785475_803281	0/0	c0009	972	1	1	0	0	0	0	copy fasta	SLC25A22	chr11	785475	803281
SLC25A22_chr11_785475_803281	0/0	c0010	972	1	0	0	0	0	1	copy fasta	SLC25A22	chr11	785475	803281
SLC25A22_chr11_785475_803281	0/0	c0011	972	1	0	1	0	0	0	copy fasta	SLC25A22	chr11	785475	803281
SLC25A22_chr11_785475_803281	0/0	c0012	972	1	0	0	1	0	0	copy fasta	SLC25A22	chr11	785475	803281
SLC25A22_chr11_785475_803281	0/0	c0013	972	1	1	0	0	0	0	copy fasta	SLC25A22	chr11	785475	803281
SLC25A22_chr11_785475_803281	0/0	c0014	972	1	1	0	0	0	0	copy fasta	SLC25A22	chr11	785475	803281
SLC25A23_chr19_6435064_6464792	1/1	c0001	1407	283	32	59	135	17	38	copy fasta	SLC25A23	chr19	6435064	6464792