JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SLC25A23_chr19_6435064_6464792	0/0	c0002	1407	33	26	5	0	0	2	copy fasta	SLC25A23	chr19	6435064	6464792
SLC25A23_chr19_6435064_6464792	0/0	c0003	1407	12	0	1	3	0	8	copy fasta	SLC25A23	chr19	6435064	6464792
SLC25A23_chr19_6435064_6464792	0/0	c0004	1407	11	11	0	0	0	0	copy fasta	SLC25A23	chr19	6435064	6464792
SLC25A23_chr19_6435064_6464792	0/0	c0005	1407	6	6	0	0	0	0	copy fasta	SLC25A23	chr19	6435064	6464792
SLC25A23_chr19_6435064_6464792	0/0	c0006	1407	6	5	1	0	0	0	copy fasta	SLC25A23	chr19	6435064	6464792
SLC25A23_chr19_6435064_6464792	0/0	c0007	1407	3	3	0	0	0	0	copy fasta	SLC25A23	chr19	6435064	6464792
SLC25A23_chr19_6435064_6464792	0/0	c0008	1407	2	2	0	0	0	0	copy fasta	SLC25A23	chr19	6435064	6464792
SLC25A23_chr19_6435064_6464792	0/0	c0009	1407	2	2	0	0	0	0	copy fasta	SLC25A23	chr19	6435064	6464792
SLC25A23_chr19_6435064_6464792	0/0	c0010	1407	1	0	0	0	0	1	copy fasta	SLC25A23	chr19	6435064	6464792
SLC25A23_chr19_6435064_6464792	0/0	c0011	1407	1	0	1	0	0	0	copy fasta	SLC25A23	chr19	6435064	6464792
SLC25A23_chr19_6435064_6464792	0/0	c0012	1407	1	1	0	0	0	0	copy fasta	SLC25A23	chr19	6435064	6464792
SLC25A23_chr19_6435064_6464792	0/0	c0013	1407	1	1	0	0	0	0	copy fasta	SLC25A23	chr19	6435064	6464792
SLC25A23_chr19_6435064_6464792	0/0	c0014	1407	1	0	1	0	0	0	copy fasta	SLC25A23	chr19	6435064	6464792
SLC25A23_chr19_6435064_6464792	0/0	c0015	1407	1	0	0	0	0	1	copy fasta	SLC25A23	chr19	6435064	6464792
SLC25A23_chr19_6435064_6464792	0/0	c0016	1407	1	0	0	0	1	0	copy fasta	SLC25A23	chr19	6435064	6464792
SLC25A23_chr19_6435064_6464792	0/0	c0017	1407	1	1	0	0	0	0	copy fasta	SLC25A23	chr19	6435064	6464792
SLC25A24_chr1_108129043_108205343	1/1	c0001	1434	298	50	55	146	13	32	copy fasta	SLC25A24	chr1	108129043	108205343
SLC25A24_chr1_108129043_108205343	0/0	c0002	1434	45	9	8	18	3	7	copy fasta	SLC25A24	chr1	108129043	108205343
SLC25A24_chr1_108129043_108205343	0/0	c0003	1434	18	15	0	0	0	3	copy fasta	SLC25A24	chr1	108129043	108205343
SLC25A24_chr1_108129043_108205343	0/0	c0004	1434	6	1	1	0	0	4	copy fasta	SLC25A24	chr1	108129043	108205343
SLC25A24_chr1_108129043_108205343	0/0	c0005	1434	3	3	0	0	0	0	copy fasta	SLC25A24	chr1	108129043	108205343
SLC25A24_chr1_108129043_108205343	0/0	c0006	1434	3	3	0	0	0	0	copy fasta	SLC25A24	chr1	108129043	108205343
SLC25A24_chr1_108129043_108205343	0/0	c0007	1434	1	1	0	0	0	0	copy fasta	SLC25A24	chr1	108129043	108205343
SLC25A25_chr9_128063232_128114245	0/1	c0001	1548	239	71	52	87	2	26	copy fasta	SLC25A25	chr9	128063232	128114245
SLC25A25_chr9_128063232_128114245	1/0	c0002	1548	12	9	2	0	0	0	copy fasta	SLC25A25	chr9	128063232	128114245
SLC25A25_chr9_128063232_128114245	0/0	c0003	1548	9	8	1	0	0	0	copy fasta	SLC25A25	chr9	128063232	128114245
SLC25A25_chr9_128063232_128114245	0/0	c0004	1548	3	3	0	0	0	0	copy fasta	SLC25A25	chr9	128063232	128114245
SLC25A25_chr9_128063232_128114245	0/0	c0005	1548	1	1	0	0	0	0	copy fasta	SLC25A25	chr9	128063232	128114245
SLC25A25_chr9_128063232_128114245	0/0	c0006	1548	1	0	1	0	0	0	copy fasta	SLC25A25	chr9	128063232	128114245
SLC25A25_chr9_128063232_128114245	0/0	c0007	1548	1	0	0	1	0	0	copy fasta	SLC25A25	chr9	128063232	128114245
SLC25A26_chr3_66216001_66383923	0/0	c0001	825	115	61	18	28	3	5	copy fasta	SLC25A26	chr3	66216001	66383923
SLC25A26_chr3_66216001_66383923	1/1	c0002	825	54	10	19	13	4	6	copy fasta	SLC25A26	chr3	66216001	66383923
SLC25A26_chr3_66216001_66383923	0/0	c0003	825	47	7	1	33	0	6	copy fasta	SLC25A26	chr3	66216001	66383923
SLC25A26_chr3_66216001_66383923	0/0	c0004	825	41	6	7	25	2	1	copy fasta	SLC25A26	chr3	66216001	66383923
SLC25A26_chr3_66216001_66383923	0/0	c0005	825	18	3	3	7	0	5	copy fasta	SLC25A26	chr3	66216001	66383923
SLC25A26_chr3_66216001_66383923	0/0	c0006	825	9	1	4	1	1	2	copy fasta	SLC25A26	chr3	66216001	66383923
SLC25A26_chr3_66216001_66383923	0/0	c0007	825	8	0	0	2	0	6	copy fasta	SLC25A26	chr3	66216001	66383923
SLC25A26_chr3_66216001_66383923	0/0	c0008	825	1	0	0	1	0	0	copy fasta	SLC25A26	chr3	66216001	66383923
SLC25A26_chr3_66216001_66383923	0/0	c0009	825	1	1	0	0	0	0	copy fasta	SLC25A26	chr3	66216001	66383923
SLC25A26_chr3_66216001_66383923	0/0	c0010	825	1	0	0	1	0	0	copy fasta	SLC25A26	chr3	66216001	66383923
SLC25A26_chr3_66216001_66383923	0/0	c0011	825	1	0	0	1	0	0	copy fasta	SLC25A26	chr3	66216001	66383923
SLC25A26_chr3_66216001_66383923	0/0	c0012	825	1	0	0	0	0	1	copy fasta	SLC25A26	chr3	66216001	66383923
SLC25A26_chr3_66216001_66383923	0/0	c0013	825	1	1	0	0	0	0	copy fasta	SLC25A26	chr3	66216001	66383923
SLC25A27_chr6_46647975_46683190	0/0	c0001	972	325	77	50	152	12	34	copy fasta	SLC25A27	chr6	46647975	46683190
SLC25A27_chr6_46647975_46683190	1/1	c0002	972	47	2	16	21	4	2	copy fasta	SLC25A27	chr6	46647975	46683190
SLC25A27_chr6_46647975_46683190	0/0	c0003	972	6	0	2	0	0	4	copy fasta	SLC25A27	chr6	46647975	46683190
SLC25A27_chr6_46647975_46683190	0/0	c0004	972	4	4	0	0	0	0	copy fasta	SLC25A27	chr6	46647975	46683190
SLC25A27_chr6_46647975_46683190	0/0	c0005	972	1	0	0	0	0	1	copy fasta	SLC25A27	chr6	46647975	46683190
SLC25A27_chr6_46647975_46683190	0/0	c0006	972	1	1	0	0	0	0	copy fasta	SLC25A27	chr6	46647975	46683190
SLC25A27_chr6_46647975_46683190	0/0	c0007	972	1	0	0	1	0	0	copy fasta	SLC25A27	chr6	46647975	46683190