JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SLC25A27_chr6_46647975_46683190	0/0	c0008	972	1	0	0	0	0	1	copy fasta	SLC25A27	chr6	46647975	46683190
SLC25A28_chr10_99605522_99625439	1/1	c0001	1095	420	81	76	201	16	44	copy fasta	SLC25A28	chr10	99605522	99625439
SLC25A28_chr10_99605522_99625439	0/0	c0002	1095	4	4	0	0	0	0	copy fasta	SLC25A28	chr10	99605522	99625439
SLC25A28_chr10_99605522_99625439	0/0	c0003	1095	4	3	1	0	0	0	copy fasta	SLC25A28	chr10	99605522	99625439
SLC25A28_chr10_99605522_99625439	0/0	c0004	1095	1	1	0	0	0	0	copy fasta	SLC25A28	chr10	99605522	99625439
SLC25A28_chr10_99605522_99625439	0/0	c0005	1095	1	0	1	0	0	0	copy fasta	SLC25A28	chr10	99605522	99625439
SLC25A28_chr10_99605522_99625439	0/0	c0006	1095	1	0	0	1	0	0	copy fasta	SLC25A28	chr10	99605522	99625439
SLC25A28_chr10_99605522_99625439	0/0	c0007	1095	1	1	0	0	0	0	copy fasta	SLC25A28	chr10	99605522	99625439
SLC25A29_chr14_100286116_100311444	1/1	c0001	912	149	50	26	35	7	29	copy fasta	SLC25A29	chr14	100286116	100311444
SLC25A29_chr14_100286116_100311444	0/0	c0002	912	142	21	18	89	9	5	copy fasta	SLC25A29	chr14	100286116	100311444
SLC25A29_chr14_100286116_100311444	0/0	c0003	912	108	23	26	46	2	11	copy fasta	SLC25A29	chr14	100286116	100311444
SLC25A29_chr14_100286116_100311444	0/0	c0004	912	4	2	0	1	0	1	copy fasta	SLC25A29	chr14	100286116	100311444
SLC25A29_chr14_100286116_100311444	0/0	c0005	912	2	0	0	0	0	2	copy fasta	SLC25A29	chr14	100286116	100311444
SLC25A29_chr14_100286116_100311444	0/0	c0006	912	2	2	0	0	0	0	copy fasta	SLC25A29	chr14	100286116	100311444
SLC25A29_chr14_100286116_100311444	0/0	c0007	912	1	0	0	1	0	0	copy fasta	SLC25A29	chr14	100286116	100311444
SLC25A29_chr14_100286116_100311444	0/0	c0008	912	1	1	0	0	0	0	copy fasta	SLC25A29	chr14	100286116	100311444
SLC25A29_chr14_100286116_100311444	0/0	c0009	912	1	1	0	0	0	0	copy fasta	SLC25A29	chr14	100286116	100311444
SLC25A2_chr5_141297635_141309049	1/0	c0001	906	186	31	45	84	9	16	copy fasta	SLC25A2	chr5	141297635	141309049
SLC25A2_chr5_141297635_141309049	0/1	c0002	906	117	50	10	52	1	3	copy fasta	SLC25A2	chr5	141297635	141309049
SLC25A2_chr5_141297635_141309049	0/0	c0003	906	49	10	14	14	4	7	copy fasta	SLC25A2	chr5	141297635	141309049
SLC25A2_chr5_141297635_141309049	0/0	c0004	906	32	1	8	22	1	0	copy fasta	SLC25A2	chr5	141297635	141309049
SLC25A2_chr5_141297635_141309049	0/0	c0005	906	24	5	3	10	1	5	copy fasta	SLC25A2	chr5	141297635	141309049
SLC25A2_chr5_141297635_141309049	0/0	c0006	906	1	1	0	0	0	0	copy fasta	SLC25A2	chr5	141297635	141309049
SLC25A2_chr5_141297635_141309049	0/0	c0007	906	1	1	0	0	0	0	copy fasta	SLC25A2	chr5	141297635	141309049
SLC25A2_chr5_141297635_141309049	0/0	c0008	906	1	0	0	1	0	0	copy fasta	SLC25A2	chr5	141297635	141309049
SLC25A2_chr5_141297635_141309049	0/0	c0009	906	1	0	0	1	0	0	copy fasta	SLC25A2	chr5	141297635	141309049
SLC25A2_chr5_141297635_141309049	0/0	c0010	906	1	1	0	0	0	0	copy fasta	SLC25A2	chr5	141297635	141309049
SLC25A2_chr5_141297635_141309049	0/0	c0011	906	1	0	0	0	0	1	copy fasta	SLC25A2	chr5	141297635	141309049
SLC25A30_chr13_45388316_45423373	1/1	c0001	876	312	72	59	137	8	34	copy fasta	SLC25A30	chr13	45388316	45423373
SLC25A30_chr13_45388316_45423373	0/0	c0002	876	5	1	2	0	2	0	copy fasta	SLC25A30	chr13	45388316	45423373
SLC25A30_chr13_45388316_45423373	0/0	c0003	876	1	0	0	1	0	0	copy fasta	SLC25A30	chr13	45388316	45423373
SLC25A30_chr13_45388316_45423373	0/0	c0004	876	1	0	1	0	0	0	copy fasta	SLC25A30	chr13	45388316	45423373
SLC25A30_chr13_45388316_45423373	0/0	c0005	876	1	1	0	0	0	0	copy fasta	SLC25A30	chr13	45388316	45423373
SLC25A31_chr4_127725400_127779292	1/0	c0001	948	219	59	24	120	5	10	copy fasta	SLC25A31	chr4	127725400	127779292
SLC25A31_chr4_127725400_127779292	0/1	c0002	948	137	23	27	57	9	20	copy fasta	SLC25A31	chr4	127725400	127779292
SLC25A31_chr4_127725400_127779292	0/0	c0003	948	8	7	1	0	0	0	copy fasta	SLC25A31	chr4	127725400	127779292
SLC25A31_chr4_127725400_127779292	0/0	c0004	948	1	0	0	1	0	0	copy fasta	SLC25A31	chr4	127725400	127779292
SLC25A31_chr4_127725400_127779292	0/0	c0005	948	1	1	0	0	0	0	copy fasta	SLC25A31	chr4	127725400	127779292
SLC25A32_chr8_103393638_103420107	1/1	c0001	948	345	89	67	141	14	32	copy fasta	SLC25A32	chr8	103393638	103420107
SLC25A32_chr8_103393638_103420107	0/0	c0002	948	5	0	3	0	2	0	copy fasta	SLC25A32	chr8	103393638	103420107
SLC25A32_chr8_103393638_103420107	0/0	c0003	948	4	0	0	2	0	2	copy fasta	SLC25A32	chr8	103393638	103420107
SLC25A32_chr8_103393638_103420107	0/0	c0004	948	1	1	0	0	0	0	copy fasta	SLC25A32	chr8	103393638	103420107
SLC25A32_chr8_103393638_103420107	0/0	c0005	948	1	0	0	1	0	0	copy fasta	SLC25A32	chr8	103393638	103420107
SLC25A33_chr1_9534465_9590173	1/1	c0001	966	343	83	62	148	12	36	copy fasta	SLC25A33	chr1	9534465	9590173
SLC25A33_chr1_9534465_9590173	0/0	c0002	966	7	7	0	0	0	0	copy fasta	SLC25A33	chr1	9534465	9590173
SLC25A33_chr1_9534465_9590173	0/0	c0003	966	3	0	0	3	0	0	copy fasta	SLC25A33	chr1	9534465	9590173
SLC25A33_chr1_9534465_9590173	0/0	c0004	966	2	0	0	0	0	2	copy fasta	SLC25A33	chr1	9534465	9590173
SLC25A33_chr1_9534465_9590173	0/0	c0005	966	2	0	0	0	0	2	copy fasta	SLC25A33	chr1	9534465	9590173
SLC25A33_chr1_9534465_9590173	0/0	c0006	966	1	1	0	0	0	0	copy fasta	SLC25A33	chr1	9534465	9590173
SLC25A33_chr1_9534465_9590173	0/0	c0007	966	1	1	0	0	0	0	copy fasta	SLC25A33	chr1	9534465	9590173