JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SLC25A33_chr1_9534465_9590173	0/0	c0008	966	1	1	0	0	0	0	copy fasta	SLC25A33	chr1	9534465	9590173
SLC25A33_chr1_9534465_9590173	0/0	c0009	966	1	1	0	0	0	0	copy fasta	SLC25A33	chr1	9534465	9590173
SLC25A33_chr1_9534465_9590173	0/0	c0010	966	1	0	0	1	0	0	copy fasta	SLC25A33	chr1	9534465	9590173
SLC25A34_chr1_15731258_15746392	1/1	c0001	915	389	82	79	160	18	48	copy fasta	SLC25A34	chr1	15731258	15746392
SLC25A34_chr1_15731258_15746392	0/0	c0002	915	10	10	0	0	0	0	copy fasta	SLC25A34	chr1	15731258	15746392
SLC25A34_chr1_15731258_15746392	0/0	c0003	915	8	0	0	8	0	0	copy fasta	SLC25A34	chr1	15731258	15746392
SLC25A34_chr1_15731258_15746392	0/0	c0004	915	2	1	1	0	0	0	copy fasta	SLC25A34	chr1	15731258	15746392
SLC25A34_chr1_15731258_15746392	0/0	c0005	915	1	0	0	1	0	0	copy fasta	SLC25A34	chr1	15731258	15746392
SLC25A34_chr1_15731258_15746392	0/0	c0006	915	1	1	0	0	0	0	copy fasta	SLC25A34	chr1	15731258	15746392
SLC25A34_chr1_15731258_15746392	0/0	c0007	915	1	0	1	0	0	0	copy fasta	SLC25A34	chr1	15731258	15746392
SLC25A34_chr1_15731258_15746392	0/0	c0008	915	1	1	0	0	0	0	copy fasta	SLC25A34	chr1	15731258	15746392
SLC25A34_chr1_15731258_15746392	0/0	c0009	915	1	0	1	0	0	0	copy fasta	SLC25A34	chr1	15731258	15746392
SLC25A34_chr1_15731258_15746392	0/0	c0010	915	1	1	0	0	0	0	copy fasta	SLC25A34	chr1	15731258	15746392
SLC25A34_chr1_15731258_15746392	0/0	c0011	915	1	0	0	1	0	0	copy fasta	SLC25A34	chr1	15731258	15746392
SLC25A34_chr1_15731258_15746392	0/0	c0012	915	1	0	0	0	0	1	copy fasta	SLC25A34	chr1	15731258	15746392
SLC25A34_chr1_15731258_15746392	0/0	c0013	915	1	0	0	0	0	1	copy fasta	SLC25A34	chr1	15731258	15746392
SLC25A35_chr17_8285061_8300400	1/1	c0001	903	392	88	73	177	18	34	copy fasta	SLC25A35	chr17	8285061	8300400
SLC25A35_chr17_8285061_8300400	0/0	c0002	903	2	0	2	0	0	0	copy fasta	SLC25A35	chr17	8285061	8300400
SLC25A35_chr17_8285061_8300400	0/0	c0003	903	1	0	0	1	0	0	copy fasta	SLC25A35	chr17	8285061	8300400
SLC25A35_chr17_8285061_8300400	0/0	c0004	903	1	0	1	0	0	0	copy fasta	SLC25A35	chr17	8285061	8300400
SLC25A35_chr17_8285061_8300400	0/0	c0005	903	1	0	0	1	0	0	copy fasta	SLC25A35	chr17	8285061	8300400
SLC25A35_chr17_8285061_8300400	0/0	c0006	903	1	1	0	0	0	0	copy fasta	SLC25A35	chr17	8285061	8300400
SLC25A35_chr17_8285061_8300400	0/0	c0007	903	1	0	0	1	0	0	copy fasta	SLC25A35	chr17	8285061	8300400
SLC25A35_chr17_8285061_8300400	0/0	c0008	903	1	1	0	0	0	0	copy fasta	SLC25A35	chr17	8285061	8300400
SLC25A36_chr3_140936836_140985995	1/1	c0001	936	256	84	44	92	12	22	copy fasta	SLC25A36	chr3	140936836	140985995
SLC25A36_chr3_140936836_140985995	0/0	c0002	936	6	0	0	6	0	0	copy fasta	SLC25A36	chr3	140936836	140985995
SLC25A36_chr3_140936836_140985995	0/0	c0003	936	5	4	1	0	0	0	copy fasta	SLC25A36	chr3	140936836	140985995
SLC25A36_chr3_140936836_140985995	0/0	c0004	936	1	0	0	1	0	0	copy fasta	SLC25A36	chr3	140936836	140985995
SLC25A36_chr3_140936836_140985995	0/0	c0005	936	1	0	0	1	0	0	copy fasta	SLC25A36	chr3	140936836	140985995
SLC25A36_chr3_140936836_140985995	0/0	c0006	936	1	0	1	0	0	0	copy fasta	SLC25A36	chr3	140936836	140985995
SLC25A37_chr8_23523956_23580463	1/1	c0001	1017	175	58	24	78	3	10	copy fasta	SLC25A37	chr8	23523956	23580463
SLC25A37_chr8_23523956_23580463	0/0	c0002	1017	65	2	28	19	4	12	copy fasta	SLC25A37	chr8	23523956	23580463
SLC25A37_chr8_23523956_23580463	0/0	c0003	1017	58	2	13	35	4	4	copy fasta	SLC25A37	chr8	23523956	23580463
SLC25A37_chr8_23523956_23580463	0/0	c0004	1017	41	11	5	22	0	3	copy fasta	SLC25A37	chr8	23523956	23580463
SLC25A37_chr8_23523956_23580463	0/0	c0005	1017	37	5	2	25	0	5	copy fasta	SLC25A37	chr8	23523956	23580463
SLC25A37_chr8_23523956_23580463	0/0	c0006	1017	19	8	1	10	0	0	copy fasta	SLC25A37	chr8	23523956	23580463
SLC25A37_chr8_23523956_23580463	0/0	c0007	1017	3	0	1	1	1	0	copy fasta	SLC25A37	chr8	23523956	23580463
SLC25A37_chr8_23523956_23580463	0/0	c0008	1017	2	1	1	0	0	0	copy fasta	SLC25A37	chr8	23523956	23580463
SLC25A37_chr8_23523956_23580463	0/0	c0009	1017	1	1	0	0	0	0	copy fasta	SLC25A37	chr8	23523956	23580463
SLC25A37_chr8_23523956_23580463	0/0	c0010	1017	1	1	0	0	0	0	copy fasta	SLC25A37	chr8	23523956	23580463
SLC25A37_chr8_23523956_23580463	0/0	c0011	1017	1	1	0	0	0	0	copy fasta	SLC25A37	chr8	23523956	23580463
SLC25A37_chr8_23523956_23580463	0/0	c0012	1017	1	1	0	0	0	0	copy fasta	SLC25A37	chr8	23523956	23580463
SLC25A37_chr8_23523956_23580463	0/0	c0013	1017	1	1	0	0	0	0	copy fasta	SLC25A37	chr8	23523956	23580463
SLC25A37_chr8_23523956_23580463	0/0	c0014	1017	1	0	1	0	0	0	copy fasta	SLC25A37	chr8	23523956	23580463
SLC25A38_chr3_39378370_39402351	1/0	c0001	915	236	79	42	85	8	21	copy fasta	SLC25A38	chr3	39378370	39402351
SLC25A38_chr3_39378370_39402351	0/1	c0002	915	151	10	34	80	6	20	copy fasta	SLC25A38	chr3	39378370	39402351
SLC25A38_chr3_39378370_39402351	0/0	c0003	915	12	0	0	10	1	1	copy fasta	SLC25A38	chr3	39378370	39402351
SLC25A38_chr3_39378370_39402351	0/0	c0004	915	4	0	0	4	0	0	copy fasta	SLC25A38	chr3	39378370	39402351
SLC25A38_chr3_39378370_39402351	0/0	c0005	915	1	0	0	1	0	0	copy fasta	SLC25A38	chr3	39378370	39402351
SLC25A38_chr3_39378370_39402351	0/0	c0006	915	1	1	0	0	0	0	copy fasta	SLC25A38	chr3	39378370	39402351