JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SLC25A38_chr3_39378370_39402351	0/0	c0007	915	1	1	0	0	0	0	copy fasta	SLC25A38	chr3	39378370	39402351
SLC25A38_chr3_39378370_39402351	0/0	c0008	915	1	1	0	0	0	0	copy fasta	SLC25A38	chr3	39378370	39402351
SLC25A38_chr3_39378370_39402351	0/0	c0009	915	1	0	0	0	1	0	copy fasta	SLC25A38	chr3	39378370	39402351
SLC25A39_chr17_44314628_44329823	0/0	c0001	1080	295	68	42	154	6	25	copy fasta	SLC25A39	chr17	44314628	44329823
SLC25A39_chr17_44314628_44329823	1/1	c0002	1080	88	16	26	23	8	13	copy fasta	SLC25A39	chr17	44314628	44329823
SLC25A39_chr17_44314628_44329823	0/0	c0003	1080	7	0	2	0	2	3	copy fasta	SLC25A39	chr17	44314628	44329823
SLC25A39_chr17_44314628_44329823	0/0	c0004	1080	2	0	2	0	0	0	copy fasta	SLC25A39	chr17	44314628	44329823
SLC25A39_chr17_44314628_44329823	0/0	c0005	1080	1	1	0	0	0	0	copy fasta	SLC25A39	chr17	44314628	44329823
SLC25A39_chr17_44314628_44329823	0/0	c0006	1080	1	0	1	0	0	0	copy fasta	SLC25A39	chr17	44314628	44329823
SLC25A39_chr17_44314628_44329823	0/0	c0007	1080	1	0	0	1	0	0	copy fasta	SLC25A39	chr17	44314628	44329823
SLC25A39_chr17_44314628_44329823	0/0	c0008	1080	1	0	1	0	0	0	copy fasta	SLC25A39	chr17	44314628	44329823
SLC25A39_chr17_44314628_44329823	0/0	c0009	1080	1	1	0	0	0	0	copy fasta	SLC25A39	chr17	44314628	44329823
SLC25A39_chr17_44314628_44329823	0/0	c0010	1080	1	0	0	0	0	1	copy fasta	SLC25A39	chr17	44314628	44329823
SLC25A3_chr12_98588686_98611367	1/1	c0001	1089	408	87	73	185	16	45	copy fasta	SLC25A3	chr12	98588686	98611367
SLC25A3_chr12_98588686_98611367	0/0	c0002	1089	9	8	1	0	0	0	copy fasta	SLC25A3	chr12	98588686	98611367
SLC25A3_chr12_98588686_98611367	0/0	c0003	1089	1	0	0	0	0	1	copy fasta	SLC25A3	chr12	98588686	98611367
SLC25A3_chr12_98588686_98611367	0/0	c0004	1089	1	1	0	0	0	0	copy fasta	SLC25A3	chr12	98588686	98611367
SLC25A3_chr12_98588686_98611367	0/0	c0005	1089	1	0	0	1	0	0	copy fasta	SLC25A3	chr12	98588686	98611367
SLC25A40_chr7_87828568_87881360	1/1	c0001	1017	222	73	49	69	7	22	copy fasta	SLC25A40	chr7	87828568	87881360
SLC25A40_chr7_87828568_87881360	0/0	c0002	1017	13	0	0	13	0	0	copy fasta	SLC25A40	chr7	87828568	87881360
SLC25A40_chr7_87828568_87881360	0/0	c0003	1017	5	0	3	0	0	2	copy fasta	SLC25A40	chr7	87828568	87881360
SLC25A40_chr7_87828568_87881360	0/0	c0004	1017	2	0	1	0	1	0	copy fasta	SLC25A40	chr7	87828568	87881360
SLC25A40_chr7_87828568_87881360	0/0	c0005	1017	1	1	0	0	0	0	copy fasta	SLC25A40	chr7	87828568	87881360
SLC25A40_chr7_87828568_87881360	0/0	c0006	1017	1	0	1	0	0	0	copy fasta	SLC25A40	chr7	87828568	87881360
SLC25A41_chr19_6421037_6438763	1/1	c0001	1113	234	54	59	76	14	29	copy fasta	SLC25A41	chr19	6421037	6438763
SLC25A41_chr19_6421037_6438763	0/0	c0002	1113	45	0	11	31	1	2	copy fasta	SLC25A41	chr19	6421037	6438763
SLC25A41_chr19_6421037_6438763	0/0	c0003	1113	42	15	2	19	0	6	copy fasta	SLC25A41	chr19	6421037	6438763
SLC25A41_chr19_6421037_6438763	0/0	c0004	1113	9	2	5	0	1	1	copy fasta	SLC25A41	chr19	6421037	6438763
SLC25A41_chr19_6421037_6438763	0/0	c0005	1113	5	5	0	0	0	0	copy fasta	SLC25A41	chr19	6421037	6438763
SLC25A41_chr19_6421037_6438763	0/0	c0006	1113	4	4	0	0	0	0	copy fasta	SLC25A41	chr19	6421037	6438763
SLC25A41_chr19_6421037_6438763	0/0	c0007	1113	1	0	0	1	0	0	copy fasta	SLC25A41	chr19	6421037	6438763
SLC25A41_chr19_6421037_6438763	0/0	c0008	1113	1	1	0	0	0	0	copy fasta	SLC25A41	chr19	6421037	6438763
SLC25A41_chr19_6421037_6438763	0/0	c0009	1113	1	0	0	1	0	0	copy fasta	SLC25A41	chr19	6421037	6438763
SLC25A41_chr19_6421037_6438763	0/0	c0010	1113	1	1	0	0	0	0	copy fasta	SLC25A41	chr19	6421037	6438763
SLC25A41_chr19_6421037_6438763	0/0	c0011	1113	1	0	1	0	0	0	copy fasta	SLC25A41	chr19	6421037	6438763
SLC25A41_chr19_6421037_6438763	0/0	c0012	1113	1	1	0	0	0	0	copy fasta	SLC25A41	chr19	6421037	6438763
SLC25A41_chr19_6421037_6438763	0/0	c0013	1113	1	1	0	0	0	0	copy fasta	SLC25A41	chr19	6421037	6438763
SLC25A41_chr19_6421037_6438763	0/0	c0014	1113	1	0	0	1	0	0	copy fasta	SLC25A41	chr19	6421037	6438763
SLC25A41_chr19_6421037_6438763	0/0	c0015	1113	1	0	0	1	0	0	copy fasta	SLC25A41	chr19	6421037	6438763
SLC25A41_chr19_6421037_6438763	0/0	c0016	1113	1	0	0	0	0	1	copy fasta	SLC25A41	chr19	6421037	6438763
SLC25A41_chr19_6421037_6438763	0/0	c0017	1113	1	0	0	0	0	1	copy fasta	SLC25A41	chr19	6421037	6438763
SLC25A42_chr19_19058994_19118030	1/1	c0001	957	284	68	66	106	11	31	copy fasta	SLC25A42	chr19	19058994	19118030
SLC25A42_chr19_19058994_19118030	0/0	c0002	957	16	14	2	0	0	0	copy fasta	SLC25A42	chr19	19058994	19118030
SLC25A42_chr19_19058994_19118030	0/0	c0003	957	13	2	4	0	3	4	copy fasta	SLC25A42	chr19	19058994	19118030
SLC25A42_chr19_19058994_19118030	0/0	c0004	957	1	1	0	0	0	0	copy fasta	SLC25A42	chr19	19058994	19118030
SLC25A42_chr19_19058994_19118030	0/0	c0005	957	1	0	0	0	0	1	copy fasta	SLC25A42	chr19	19058994	19118030
SLC25A42_chr19_19058994_19118030	0/0	c0006	957	1	1	0	0	0	0	copy fasta	SLC25A42	chr19	19058994	19118030
SLC25A43_chrX_119394336_119459478	0/1	c0001	1026	130	34	24	51	4	16	copy fasta	SLC25A43	chrX	119394336	119459478
SLC25A43_chrX_119394336_119459478	1/0	c0002	1026	106	21	23	49	5	7	copy fasta	SLC25A43	chrX	119394336	119459478
SLC25A43_chrX_119394336_119459478	0/0	c0003	1026	54	6	8	28	2	10	copy fasta	SLC25A43	chrX	119394336	119459478