JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SLC25A47_chr14_100318339_100335421	0/0	c0010	927	1	0	0	1	0	0	copy fasta	SLC25A47	chr14	100318339	100335421
SLC25A47_chr14_100318339_100335421	0/0	c0011	927	1	0	0	1	0	0	copy fasta	SLC25A47	chr14	100318339	100335421
SLC25A47_chr14_100318339_100335421	0/0	c0012	927	1	1	0	0	0	0	copy fasta	SLC25A47	chr14	100318339	100335421
SLC25A47_chr14_100318339_100335421	0/0	c0013	927	1	0	1	0	0	0	copy fasta	SLC25A47	chr14	100318339	100335421
SLC25A47_chr14_100318339_100335421	0/0	c0014	927	1	0	1	0	0	0	copy fasta	SLC25A47	chr14	100318339	100335421
SLC25A47_chr14_100318339_100335421	0/0	c0015	927	1	1	0	0	0	0	copy fasta	SLC25A47	chr14	100318339	100335421
SLC25A47_chr14_100318339_100335421	0/0	c0016	927	1	0	0	1	0	0	copy fasta	SLC25A47	chr14	100318339	100335421
SLC25A47_chr14_100318339_100335421	0/0	c0017	927	1	0	1	0	0	0	copy fasta	SLC25A47	chr14	100318339	100335421
SLC25A47_chr14_100318339_100335421	0/0	c0018	927	1	0	0	1	0	0	copy fasta	SLC25A47	chr14	100318339	100335421
SLC25A48_chr5_135829663_135893637	0/0	c0001	936	87	15	22	35	3	12	copy fasta	SLC25A48	chr5	135829663	135893637
SLC25A48_chr5_135829663_135893637	1/0	c0002	936	68	22	9	22	4	10	copy fasta	SLC25A48	chr5	135829663	135893637
SLC25A48_chr5_135829663_135893637	0/1	c0003	936	67	28	13	17	1	7	copy fasta	SLC25A48	chr5	135829663	135893637
SLC25A48_chr5_135829663_135893637	0/0	c0004	936	49	0	4	42	1	2	copy fasta	SLC25A48	chr5	135829663	135893637
SLC25A48_chr5_135829663_135893637	0/0	c0005	936	34	7	7	19	0	1	copy fasta	SLC25A48	chr5	135829663	135893637
SLC25A48_chr5_135829663_135893637	0/0	c0006	936	20	7	4	5	2	2	copy fasta	SLC25A48	chr5	135829663	135893637
SLC25A48_chr5_135829663_135893637	0/0	c0007	936	13	7	2	1	1	2	copy fasta	SLC25A48	chr5	135829663	135893637
SLC25A48_chr5_135829663_135893637	0/0	c0008	936	4	0	0	4	0	0	copy fasta	SLC25A48	chr5	135829663	135893637
SLC25A48_chr5_135829663_135893637	0/0	c0009	936	4	0	0	4	0	0	copy fasta	SLC25A48	chr5	135829663	135893637
SLC25A48_chr5_135829663_135893637	0/0	c0010	936	3	0	0	0	1	2	copy fasta	SLC25A48	chr5	135829663	135893637
SLC25A48_chr5_135829663_135893637	0/0	c0011	936	3	0	1	2	0	0	copy fasta	SLC25A48	chr5	135829663	135893637
SLC25A48_chr5_135829663_135893637	0/0	c0012	936	2	0	2	0	0	0	copy fasta	SLC25A48	chr5	135829663	135893637
SLC25A48_chr5_135829663_135893637	0/0	c0013	936	2	2	0	0	0	0	copy fasta	SLC25A48	chr5	135829663	135893637
SLC25A48_chr5_135829663_135893637	0/0	c0014	936	1	1	0	0	0	0	copy fasta	SLC25A48	chr5	135829663	135893637
SLC25A48_chr5_135829663_135893637	0/0	c0015	936	1	0	0	1	0	0	copy fasta	SLC25A48	chr5	135829663	135893637
SLC25A48_chr5_135829663_135893637	0/0	c0016	936	1	0	0	0	1	0	copy fasta	SLC25A48	chr5	135829663	135893637
SLC25A48_chr5_135829663_135893637	0/0	c0017	936	1	1	0	0	0	0	copy fasta	SLC25A48	chr5	135829663	135893637
SLC25A4_chr4_185138266_185155382	1/1	c0001	897	437	92	79	205	13	46	copy fasta	SLC25A4	chr4	185138266	185155382
SLC25A4_chr4_185138266_185155382	0/0	c0002	897	2	0	1	0	1	0	copy fasta	SLC25A4	chr4	185138266	185155382
SLC25A4_chr4_185138266_185155382	0/0	c0003	897	2	2	0	0	0	0	copy fasta	SLC25A4	chr4	185138266	185155382
SLC25A4_chr4_185138266_185155382	0/0	c0004	897	1	1	0	0	0	0	copy fasta	SLC25A4	chr4	185138266	185155382
SLC25A4_chr4_185138266_185155382	0/0	c0005	897	1	1	0	0	0	0	copy fasta	SLC25A4	chr4	185138266	185155382
SLC25A4_chr4_185138266_185155382	0/0	c0006	928	1	0	0	1	0	0	copy fasta	SLC25A4	chr4	185138266	185155382
SLC25A51_chr9_37882604_37909127	1/1	c0001	894	329	81	63	140	10	33	copy fasta	SLC25A51	chr9	37882604	37909127
SLC25A51_chr9_37882604_37909127	0/0	c0002	894	109	7	21	68	2	11	copy fasta	SLC25A51	chr9	37882604	37909127
SLC25A51_chr9_37882604_37909127	0/0	c0003	894	2	0	0	2	0	0	copy fasta	SLC25A51	chr9	37882604	37909127
SLC25A51_chr9_37882604_37909127	0/0	c0004	894	2	2	0	0	0	0	copy fasta	SLC25A51	chr9	37882604	37909127
SLC25A52_chr18_31754584_31765880	0/0	c0001	894	369	63	71	191	16	28	copy fasta	SLC25A52	chr18	31754584	31765880
SLC25A52_chr18_31754584_31765880	0/0	c0002	894	15	13	0	0	0	2	copy fasta	SLC25A52	chr18	31754584	31765880
SLC25A52_chr18_31754584_31765880	0/0	c0003	894	9	9	0	0	0	0	copy fasta	SLC25A52	chr18	31754584	31765880
SLC25A52_chr18_31754584_31765880	0/0	c0004	894	4	4	0	0	0	0	copy fasta	SLC25A52	chr18	31754584	31765880
SLC25A52_chr18_31754584_31765880	0/0	c0005	894	4	4	0	0	0	0	copy fasta	SLC25A52	chr18	31754584	31765880
SLC25A52_chr18_31754584_31765880	0/0	c0006	894	1	0	0	0	0	1	copy fasta	SLC25A52	chr18	31754584	31765880
SLC25A52_chr18_31754584_31765880	0/0	c0007	894	1	1	0	0	0	0	copy fasta	SLC25A52	chr18	31754584	31765880
SLC25A52_chr18_31754584_31765880	0/0	c0008	894	1	0	1	0	0	0	copy fasta	SLC25A52	chr18	31754584	31765880
SLC25A52_chr18_31754584_31765880	1/0	c0009	894	1	0	0	0	0	0	copy fasta	SLC25A52	chr18	31754584	31765880
SLC25A52_chr18_31754584_31765880	0/0	c0010	894	1	0	0	1	0	0	copy fasta	SLC25A52	chr18	31754584	31765880
SLC25A52_chr18_31754584_31765880	0/0	c0011	894	1	0	0	0	0	1	copy fasta	SLC25A52	chr18	31754584	31765880
SLC25A53_chrX_104094214_104162009	1/1	c0001	924	286	61	49	134	13	27	copy fasta	SLC25A53	chrX	104094214	104162009
SLC25A53_chrX_104094214_104162009	0/0	c0002	924	9	9	0	0	0	0	copy fasta	SLC25A53	chrX	104094214	104162009
SLC25A53_chrX_104094214_104162009	0/0	c0003	924	1	0	0	0	0	1	copy fasta	SLC25A53	chrX	104094214	104162009