JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SLC25A53_chrX_104094214_104162009	0/0	c0004	924	1	1	0	0	0	0	copy fasta	SLC25A53	chrX	104094214	104162009
SLC25A53_chrX_104094214_104162009	0/0	c0005	924	1	1	0	0	0	0	copy fasta	SLC25A53	chrX	104094214	104162009
SLC25A5_chrX_119463444_119476396	0/1	c0001	897	238	72	43	92	7	23	copy fasta	SLC25A5	chrX	119463444	119476396
SLC25A5_chrX_119463444_119476396	1/0	c0002	897	83	3	16	48	4	11	copy fasta	SLC25A5	chrX	119463444	119476396
SLC25A5_chrX_119463444_119476396	0/0	c0003	897	1	1	0	0	0	0	copy fasta	SLC25A5	chrX	119463444	119476396
SLC25A5_chrX_119463444_119476396	0/0	c0004	875	1	0	1	0	0	0	copy fasta	SLC25A5	chrX	119463444	119476396
SLC25A5_chrX_119463444_119476396	0/0	c0005	911	1	0	0	1	0	0	copy fasta	SLC25A5	chrX	119463444	119476396
SLC25A6_chrX_1381152_1397113	1/1	c0001	897	121	21	28	55	5	10	copy fasta	SLC25A6	chrX	1381152	1397113
SLC25A6_chrX_1381152_1397113	0/0	c0002	897	42	27	8	5	2	0	copy fasta	SLC25A6	chrX	1381152	1397113
SLC25A6_chrX_1381152_1397113	0/0	c0003	897	11	1	3	6	0	1	copy fasta	SLC25A6	chrX	1381152	1397113
SLC25A6_chrX_1381152_1397113	0/0	c0004	897	7	0	0	7	0	0	copy fasta	SLC25A6	chrX	1381152	1397113
SLC25A6_chrX_1381152_1397113	0/0	c0005	897	2	0	0	1	0	1	copy fasta	SLC25A6	chrX	1381152	1397113
SLC25A6_chrX_1381152_1397113	0/0	c0006	897	2	2	0	0	0	0	copy fasta	SLC25A6	chrX	1381152	1397113
SLC25A6_chrX_1381152_1397113	0/0	c0007	897	2	2	0	0	0	0	copy fasta	SLC25A6	chrX	1381152	1397113
SLC25A6_chrX_1381152_1397113	0/0	c0008	897	1	1	0	0	0	0	copy fasta	SLC25A6	chrX	1381152	1397113
SLC25A6_chrX_1381152_1397113	0/0	c0009	899	1	0	0	1	0	0	copy fasta	SLC25A6	chrX	1381152	1397113
SLC25A6_chrX_1381152_1397113	0/0	c0010	897	1	1	0	0	0	0	copy fasta	SLC25A6	chrX	1381152	1397113
SLC25A6_chrX_1381152_1397113	0/0	c0011	895	1	0	0	1	0	0	copy fasta	SLC25A6	chrX	1381152	1397113
SLC25A6_chrX_1381152_1397113	0/0	c0012	897	1	1	0	0	0	0	copy fasta	SLC25A6	chrX	1381152	1397113
SLC25A6_chrX_1381152_1397113	0/0	c0013	895	1	0	0	1	0	0	copy fasta	SLC25A6	chrX	1381152	1397113
SLC25A6_chrX_1381152_1397113	0/0	c0014	898	1	0	0	1	0	0	copy fasta	SLC25A6	chrX	1381152	1397113
SLC25A6_chrX_1381152_1397113	0/0	c0015	898	1	0	0	0	0	1	copy fasta	SLC25A6	chrX	1381152	1397113
SLC25A6_chrX_1381152_1397113	0/0	c0016	895	1	1	0	0	0	0	copy fasta	SLC25A6	chrX	1381152	1397113
SLC26A11_chr17_80215427_80258500	1/1	c0001	1821	299	60	71	115	13	38	copy fasta	SLC26A11	chr17	80215427	80258500
SLC26A11_chr17_80215427_80258500	0/0	c0002	1821	12	0	0	12	0	0	copy fasta	SLC26A11	chr17	80215427	80258500
SLC26A11_chr17_80215427_80258500	0/0	c0003	1821	8	4	2	0	1	1	copy fasta	SLC26A11	chr17	80215427	80258500
SLC26A11_chr17_80215427_80258500	0/0	c0004	1821	8	8	0	0	0	0	copy fasta	SLC26A11	chr17	80215427	80258500
SLC26A11_chr17_80215427_80258500	0/0	c0005	1821	7	7	0	0	0	0	copy fasta	SLC26A11	chr17	80215427	80258500
SLC26A11_chr17_80215427_80258500	0/0	c0006	1821	5	0	0	2	0	3	copy fasta	SLC26A11	chr17	80215427	80258500
SLC26A11_chr17_80215427_80258500	0/0	c0007	1821	4	4	0	0	0	0	copy fasta	SLC26A11	chr17	80215427	80258500
SLC26A11_chr17_80215427_80258500	0/0	c0008	1821	3	0	0	3	0	0	copy fasta	SLC26A11	chr17	80215427	80258500
SLC26A11_chr17_80215427_80258500	0/0	c0009	1821	2	0	0	2	0	0	copy fasta	SLC26A11	chr17	80215427	80258500
SLC26A11_chr17_80215427_80258500	0/0	c0010	1821	2	0	2	0	0	0	copy fasta	SLC26A11	chr17	80215427	80258500
SLC26A11_chr17_80215427_80258500	0/0	c0011	1821	2	1	1	0	0	0	copy fasta	SLC26A11	chr17	80215427	80258500
SLC26A11_chr17_80215427_80258500	0/0	c0012	1821	1	1	0	0	0	0	copy fasta	SLC26A11	chr17	80215427	80258500
SLC26A11_chr17_80215427_80258500	0/0	c0013	1821	1	0	1	0	0	0	copy fasta	SLC26A11	chr17	80215427	80258500
SLC26A11_chr17_80215427_80258500	0/0	c0014	1821	1	0	0	1	0	0	copy fasta	SLC26A11	chr17	80215427	80258500
SLC26A11_chr17_80215427_80258500	0/0	c0015	1821	1	0	0	1	0	0	copy fasta	SLC26A11	chr17	80215427	80258500
SLC26A11_chr17_80215427_80258500	0/0	c0016	1821	1	0	0	0	0	1	copy fasta	SLC26A11	chr17	80215427	80258500
SLC26A11_chr17_80215427_80258500	0/0	c0017	1821	1	0	0	0	0	1	copy fasta	SLC26A11	chr17	80215427	80258500
SLC26A11_chr17_80215427_80258500	0/0	c0018	1821	1	1	0	0	0	0	copy fasta	SLC26A11	chr17	80215427	80258500
SLC26A11_chr17_80215427_80258500	0/0	c0019	1821	1	0	1	0	0	0	copy fasta	SLC26A11	chr17	80215427	80258500
SLC26A11_chr17_80215427_80258500	0/0	c0020	1821	1	1	0	0	0	0	copy fasta	SLC26A11	chr17	80215427	80258500
SLC26A11_chr17_80215427_80258500	0/0	c0021	1821	1	1	0	0	0	0	copy fasta	SLC26A11	chr17	80215427	80258500
SLC26A11_chr17_80215427_80258500	0/0	c0022	1821	1	1	0	0	0	0	copy fasta	SLC26A11	chr17	80215427	80258500
SLC26A11_chr17_80215427_80258500	0/0	c0023	1821	1	1	0	0	0	0	copy fasta	SLC26A11	chr17	80215427	80258500
SLC26A11_chr17_80215427_80258500	0/0	c0024	1821	1	1	0	0	0	0	copy fasta	SLC26A11	chr17	80215427	80258500
SLC26A11_chr17_80215427_80258500	0/0	c0025	1821	1	1	0	0	0	0	copy fasta	SLC26A11	chr17	80215427	80258500
SLC26A1_chr4_982657_998404	0/0	c0001	2106	163	19	38	86	4	16	copy fasta	SLC26A1	chr4	982657	998404
SLC26A1_chr4_982657_998404	1/0	c0002	2106	114	12	32	53	9	7	copy fasta	SLC26A1	chr4	982657	998404