JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SLC26A1_chr4_982657_998404	0/0	c0003	2106	86	22	7	37	4	16	copy fasta	SLC26A1	chr4	982657	998404
SLC26A1_chr4_982657_998404	0/0	c0004	2106	13	7	2	3	0	1	copy fasta	SLC26A1	chr4	982657	998404
SLC26A1_chr4_982657_998404	0/0	c0005	2106	8	8	0	0	0	0	copy fasta	SLC26A1	chr4	982657	998404
SLC26A1_chr4_982657_998404	0/0	c0006	2106	7	0	0	7	0	0	copy fasta	SLC26A1	chr4	982657	998404
SLC26A1_chr4_982657_998404	0/0	c0007	2106	7	7	0	0	0	0	copy fasta	SLC26A1	chr4	982657	998404
SLC26A1_chr4_982657_998404	0/0	c0008	2106	6	0	0	5	1	0	copy fasta	SLC26A1	chr4	982657	998404
SLC26A1_chr4_982657_998404	0/0	c0009	2106	5	0	0	1	0	4	copy fasta	SLC26A1	chr4	982657	998404
SLC26A1_chr4_982657_998404	0/0	c0010	2106	4	4	0	0	0	0	copy fasta	SLC26A1	chr4	982657	998404
SLC26A1_chr4_982657_998404	0/0	c0011	2106	3	3	0	0	0	0	copy fasta	SLC26A1	chr4	982657	998404
SLC26A1_chr4_982657_998404	0/0	c0012	2106	3	3	0	0	0	0	copy fasta	SLC26A1	chr4	982657	998404
SLC26A1_chr4_982657_998404	0/0	c0013	2106	2	2	0	0	0	0	copy fasta	SLC26A1	chr4	982657	998404
SLC26A1_chr4_982657_998404	0/0	c0014	2106	2	0	0	2	0	0	copy fasta	SLC26A1	chr4	982657	998404
SLC26A1_chr4_982657_998404	0/0	c0015	2106	2	2	0	0	0	0	copy fasta	SLC26A1	chr4	982657	998404
SLC26A1_chr4_982657_998404	0/0	c0016	2106	2	2	0	0	0	0	copy fasta	SLC26A1	chr4	982657	998404
SLC26A1_chr4_982657_998404	0/0	c0017	2106	1	1	0	0	0	0	copy fasta	SLC26A1	chr4	982657	998404
SLC26A1_chr4_982657_998404	0/0	c0018	2106	1	1	0	0	0	0	copy fasta	SLC26A1	chr4	982657	998404
SLC26A1_chr4_982657_998404	0/0	c0019	2106	1	0	0	1	0	0	copy fasta	SLC26A1	chr4	982657	998404
SLC26A1_chr4_982657_998404	0/0	c0020	2106	1	1	0	0	0	0	copy fasta	SLC26A1	chr4	982657	998404
SLC26A1_chr4_982657_998404	0/0	c0021	2106	1	1	0	0	0	0	copy fasta	SLC26A1	chr4	982657	998404
SLC26A1_chr4_982657_998404	0/0	c0022	2106	1	0	0	0	0	1	copy fasta	SLC26A1	chr4	982657	998404
SLC26A1_chr4_982657_998404	0/0	c0023	2106	1	0	0	1	0	0	copy fasta	SLC26A1	chr4	982657	998404
SLC26A1_chr4_982657_998404	0/0	c0024	2106	1	0	0	1	0	0	copy fasta	SLC26A1	chr4	982657	998404
SLC26A1_chr4_982657_998404	0/0	c0025	2106	1	0	1	0	0	0	copy fasta	SLC26A1	chr4	982657	998404
SLC26A1_chr4_982657_998404	0/0	c0026	2106	1	0	0	1	0	0	copy fasta	SLC26A1	chr4	982657	998404
SLC26A1_chr4_982657_998404	0/1	c0027	2106	1	0	0	0	0	0	copy fasta	SLC26A1	chr4	982657	998404
SLC26A1_chr4_982657_998404	0/0	c0028	2106	1	0	0	1	0	0	copy fasta	SLC26A1	chr4	982657	998404
SLC26A1_chr4_982657_998404	0/0	c0029	2106	1	0	0	1	0	0	copy fasta	SLC26A1	chr4	982657	998404
SLC26A1_chr4_982657_998404	0/0	c0030	2106	1	0	0	1	0	0	copy fasta	SLC26A1	chr4	982657	998404
SLC26A1_chr4_982657_998404	0/0	c0031	2106	1	0	0	0	0	1	copy fasta	SLC26A1	chr4	982657	998404
SLC26A1_chr4_982657_998404	0/0	c0032	2106	1	0	1	0	0	0	copy fasta	SLC26A1	chr4	982657	998404
SLC26A1_chr4_982657_998404	0/0	c0033	2106	1	0	0	1	0	0	copy fasta	SLC26A1	chr4	982657	998404
SLC26A1_chr4_982657_998404	0/0	c0034	2106	1	0	0	1	0	0	copy fasta	SLC26A1	chr4	982657	998404
SLC26A1_chr4_982657_998404	0/0	c0035	2106	1	0	1	0	0	0	copy fasta	SLC26A1	chr4	982657	998404
SLC26A1_chr4_982657_998404	0/0	c0036	2106	1	1	0	0	0	0	copy fasta	SLC26A1	chr4	982657	998404
SLC26A1_chr4_982657_998404	0/0	c0037	2106	1	0	0	1	0	0	copy fasta	SLC26A1	chr4	982657	998404
SLC26A1_chr4_982657_998404	0/0	c0038	2106	1	1	0	0	0	0	copy fasta	SLC26A1	chr4	982657	998404
SLC26A1_chr4_982657_998404	0/0	c0039	2106	1	1	0	0	0	0	copy fasta	SLC26A1	chr4	982657	998404
SLC26A2_chr5_149955758_149992400	0/1	c0001	2220	278	61	49	124	8	35	copy fasta	SLC26A2	chr5	149955758	149992400
SLC26A2_chr5_149955758_149992400	0/0	c0002	2220	63	21	17	22	2	1	copy fasta	SLC26A2	chr5	149955758	149992400
SLC26A2_chr5_149955758_149992400	0/0	c0003	2220	7	6	1	0	0	0	copy fasta	SLC26A2	chr5	149955758	149992400
SLC26A2_chr5_149955758_149992400	0/0	c0004	2220	4	0	0	0	2	2	copy fasta	SLC26A2	chr5	149955758	149992400
SLC26A2_chr5_149955758_149992400	0/0	c0005	2220	4	4	0	0	0	0	copy fasta	SLC26A2	chr5	149955758	149992400
SLC26A2_chr5_149955758_149992400	1/0	c0006	2220	2	0	1	0	0	0	copy fasta	SLC26A2	chr5	149955758	149992400
SLC26A2_chr5_149955758_149992400	0/0	c0007	2220	2	0	0	0	0	2	copy fasta	SLC26A2	chr5	149955758	149992400
SLC26A2_chr5_149955758_149992400	0/0	c0008	2220	1	0	0	1	0	0	copy fasta	SLC26A2	chr5	149955758	149992400
SLC26A2_chr5_149955758_149992400	0/0	c0009	2220	1	0	0	1	0	0	copy fasta	SLC26A2	chr5	149955758	149992400
SLC26A2_chr5_149955758_149992400	0/0	c0010	2220	1	0	0	0	0	1	copy fasta	SLC26A2	chr5	149955758	149992400
SLC26A2_chr5_149955758_149992400	0/0	c0011	2220	1	0	0	0	0	1	copy fasta	SLC26A2	chr5	149955758	149992400
SLC26A3_chr7_107760469_107808223	0/1	c0001	2295	323	75	62	140	11	34	copy fasta	SLC26A3	chr7	107760469	107808223
SLC26A3_chr7_107760469_107808223	0/0	c0002	2295	73	4	8	47	5	9	copy fasta	SLC26A3	chr7	107760469	107808223