JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SLC26A3_chr7_107760469_107808223	0/0	c0003	2295	7	0	0	7	0	0	copy fasta	SLC26A3	chr7	107760469	107808223
SLC26A3_chr7_107760469_107808223	0/0	c0004	2295	6	0	3	1	0	2	copy fasta	SLC26A3	chr7	107760469	107808223
SLC26A3_chr7_107760469_107808223	0/0	c0005	2295	4	4	0	0	0	0	copy fasta	SLC26A3	chr7	107760469	107808223
SLC26A3_chr7_107760469_107808223	0/0	c0006	2295	4	4	0	0	0	0	copy fasta	SLC26A3	chr7	107760469	107808223
SLC26A3_chr7_107760469_107808223	0/0	c0007	2295	2	1	1	0	0	0	copy fasta	SLC26A3	chr7	107760469	107808223
SLC26A3_chr7_107760469_107808223	0/0	c0008	2295	2	2	0	0	0	0	copy fasta	SLC26A3	chr7	107760469	107808223
SLC26A3_chr7_107760469_107808223	0/0	c0009	2295	1	1	0	0	0	0	copy fasta	SLC26A3	chr7	107760469	107808223
SLC26A3_chr7_107760469_107808223	0/0	c0010	2295	1	1	0	0	0	0	copy fasta	SLC26A3	chr7	107760469	107808223
SLC26A3_chr7_107760469_107808223	0/0	c0011	2295	1	1	0	0	0	0	copy fasta	SLC26A3	chr7	107760469	107808223
SLC26A3_chr7_107760469_107808223	0/0	c0012	2295	1	0	0	1	0	0	copy fasta	SLC26A3	chr7	107760469	107808223
SLC26A3_chr7_107760469_107808223	0/0	c0013	2295	1	0	0	1	0	0	copy fasta	SLC26A3	chr7	107760469	107808223
SLC26A3_chr7_107760469_107808223	0/0	c0014	2295	1	0	0	0	0	1	copy fasta	SLC26A3	chr7	107760469	107808223
SLC26A3_chr7_107760469_107808223	0/0	c0015	2295	1	0	0	0	0	1	copy fasta	SLC26A3	chr7	107760469	107808223
SLC26A3_chr7_107760469_107808223	0/0	c0016	2295	1	1	0	0	0	0	copy fasta	SLC26A3	chr7	107760469	107808223
SLC26A3_chr7_107760469_107808223	0/0	c0017	2295	1	1	0	0	0	0	copy fasta	SLC26A3	chr7	107760469	107808223
SLC26A3_chr7_107760469_107808223	1/0	c0018	2295	1	0	0	0	0	0	copy fasta	SLC26A3	chr7	107760469	107808223
SLC26A3_chr7_107760469_107808223	0/0	c0019	2295	1	0	0	1	0	0	copy fasta	SLC26A3	chr7	107760469	107808223
SLC26A3_chr7_107760469_107808223	0/0	c0020	2295	1	0	0	0	0	1	copy fasta	SLC26A3	chr7	107760469	107808223
SLC26A3_chr7_107760469_107808223	0/0	c0021	2295	1	1	0	0	0	0	copy fasta	SLC26A3	chr7	107760469	107808223
SLC26A3_chr7_107760469_107808223	0/0	c0022	2295	1	1	0	0	0	0	copy fasta	SLC26A3	chr7	107760469	107808223
SLC26A3_chr7_107760469_107808223	0/0	c0023	2295	1	1	0	0	0	0	copy fasta	SLC26A3	chr7	107760469	107808223
SLC26A4_chr7_107655828_107722809	1/1	c0001	2343	329	67	70	145	16	29	copy fasta	SLC26A4	chr7	107655828	107722809
SLC26A4_chr7_107655828_107722809	0/0	c0002	2343	4	4	0	0	0	0	copy fasta	SLC26A4	chr7	107655828	107722809
SLC26A4_chr7_107655828_107722809	0/0	c0003	2343	4	4	0	0	0	0	copy fasta	SLC26A4	chr7	107655828	107722809
SLC26A4_chr7_107655828_107722809	0/0	c0004	2343	3	3	0	0	0	0	copy fasta	SLC26A4	chr7	107655828	107722809
SLC26A4_chr7_107655828_107722809	0/0	c0005	2343	3	0	0	0	0	3	copy fasta	SLC26A4	chr7	107655828	107722809
SLC26A4_chr7_107655828_107722809	0/0	c0006	2343	2	2	0	0	0	0	copy fasta	SLC26A4	chr7	107655828	107722809
SLC26A4_chr7_107655828_107722809	0/0	c0007	2343	2	0	0	0	0	2	copy fasta	SLC26A4	chr7	107655828	107722809
SLC26A4_chr7_107655828_107722809	0/0	c0008	2343	2	2	0	0	0	0	copy fasta	SLC26A4	chr7	107655828	107722809
SLC26A4_chr7_107655828_107722809	0/0	c0009	2343	2	1	1	0	0	0	copy fasta	SLC26A4	chr7	107655828	107722809
SLC26A4_chr7_107655828_107722809	0/0	c0010	2343	2	2	0	0	0	0	copy fasta	SLC26A4	chr7	107655828	107722809
SLC26A4_chr7_107655828_107722809	0/0	c0011	2343	2	2	0	0	0	0	copy fasta	SLC26A4	chr7	107655828	107722809
SLC26A4_chr7_107655828_107722809	0/0	c0012	2343	1	0	0	0	0	1	copy fasta	SLC26A4	chr7	107655828	107722809
SLC26A4_chr7_107655828_107722809	0/0	c0013	2343	1	0	1	0	0	0	copy fasta	SLC26A4	chr7	107655828	107722809
SLC26A4_chr7_107655828_107722809	0/0	c0014	2343	1	0	0	1	0	0	copy fasta	SLC26A4	chr7	107655828	107722809
SLC26A4_chr7_107655828_107722809	0/0	c0015	2343	1	1	0	0	0	0	copy fasta	SLC26A4	chr7	107655828	107722809
SLC26A4_chr7_107655828_107722809	0/0	c0016	2343	1	0	0	1	0	0	copy fasta	SLC26A4	chr7	107655828	107722809
SLC26A4_chr7_107655828_107722809	0/0	c0017	2343	1	1	0	0	0	0	copy fasta	SLC26A4	chr7	107655828	107722809
SLC26A4_chr7_107655828_107722809	0/0	c0018	2343	1	0	0	1	0	0	copy fasta	SLC26A4	chr7	107655828	107722809
SLC26A4_chr7_107655828_107722809	0/0	c0019	2343	1	1	0	0	0	0	copy fasta	SLC26A4	chr7	107655828	107722809
SLC26A4_chr7_107655828_107722809	0/0	c0020	2343	1	0	0	0	0	1	copy fasta	SLC26A4	chr7	107655828	107722809
SLC26A4_chr7_107655828_107722809	0/0	c0021	2343	1	0	0	1	0	0	copy fasta	SLC26A4	chr7	107655828	107722809
SLC26A4_chr7_107655828_107722809	0/0	c0022	2343	1	0	0	1	0	0	copy fasta	SLC26A4	chr7	107655828	107722809
SLC26A5_chr7_103369207_103451207	1/1	c0001	2235	330	80	59	142	13	34	copy fasta	SLC26A5	chr7	103369207	103451207
SLC26A5_chr7_103369207_103451207	0/0	c0002	2235	3	0	0	3	0	0	copy fasta	SLC26A5	chr7	103369207	103451207
SLC26A5_chr7_103369207_103451207	0/0	c0003	2235	2	2	0	0	0	0	copy fasta	SLC26A5	chr7	103369207	103451207
SLC26A5_chr7_103369207_103451207	0/0	c0004	2235	2	2	0	0	0	0	copy fasta	SLC26A5	chr7	103369207	103451207
SLC26A5_chr7_103369207_103451207	0/0	c0005	2235	1	0	0	0	1	0	copy fasta	SLC26A5	chr7	103369207	103451207
SLC26A5_chr7_103369207_103451207	0/0	c0006	2235	1	1	0	0	0	0	copy fasta	SLC26A5	chr7	103369207	103451207
SLC26A5_chr7_103369207_103451207	0/0	c0007	2235	1	1	0	0	0	0	copy fasta	SLC26A5	chr7	103369207	103451207