JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ATP2C2_chr16_84363538_84469187	0/0	c0077	2841	1	0	0	1	0	0	copy fasta	ATP2C2	chr16	84363538	84469187
ATP2C2_chr16_84363538_84469187	0/0	c0078	2841	1	0	1	0	0	0	copy fasta	ATP2C2	chr16	84363538	84469187
ATP2C2_chr16_84363538_84469187	0/0	c0079	2841	1	0	0	1	0	0	copy fasta	ATP2C2	chr16	84363538	84469187
ATP2C2_chr16_84363538_84469187	0/1	c0080	2841	1	0	0	0	0	0	copy fasta	ATP2C2	chr16	84363538	84469187
ATP2C2_chr16_84363538_84469187	0/0	c0081	2841	1	0	0	0	0	1	copy fasta	ATP2C2	chr16	84363538	84469187
ATP4A_chr19_35545031_35568658	0/0	c0001	3108	129	48	33	23	7	18	copy fasta	ATP4A	chr19	35545031	35568658
ATP4A_chr19_35545031_35568658	1/0	c0002	3108	121	2	22	89	2	5	copy fasta	ATP4A	chr19	35545031	35568658
ATP4A_chr19_35545031_35568658	0/1	c0003	3108	95	15	16	41	3	19	copy fasta	ATP4A	chr19	35545031	35568658
ATP4A_chr19_35545031_35568658	0/0	c0004	3108	17	16	1	0	0	0	copy fasta	ATP4A	chr19	35545031	35568658
ATP4A_chr19_35545031_35568658	0/0	c0005	3108	15	5	0	8	0	2	copy fasta	ATP4A	chr19	35545031	35568658
ATP4A_chr19_35545031_35568658	0/0	c0006	3109	5	0	1	4	0	0	copy fasta	ATP4A	chr19	35545031	35568658
ATP4A_chr19_35545031_35568658	0/0	c0007	3108	5	0	0	5	0	0	copy fasta	ATP4A	chr19	35545031	35568658
ATP4A_chr19_35545031_35568658	0/0	c0008	3108	4	2	0	2	0	0	copy fasta	ATP4A	chr19	35545031	35568658
ATP4A_chr19_35545031_35568658	0/0	c0009	3108	3	3	0	0	0	0	copy fasta	ATP4A	chr19	35545031	35568658
ATP4A_chr19_35545031_35568658	0/0	c0010	3108	3	0	0	1	0	2	copy fasta	ATP4A	chr19	35545031	35568658
ATP4A_chr19_35545031_35568658	0/0	c0011	3109	2	0	2	0	0	0	copy fasta	ATP4A	chr19	35545031	35568658
ATP4A_chr19_35545031_35568658	0/0	c0012	3108	2	0	1	0	0	1	copy fasta	ATP4A	chr19	35545031	35568658
ATP4A_chr19_35545031_35568658	0/0	c0013	3108	2	2	0	0	0	0	copy fasta	ATP4A	chr19	35545031	35568658
ATP4A_chr19_35545031_35568658	0/0	c0014	3108	2	0	0	0	1	1	copy fasta	ATP4A	chr19	35545031	35568658
ATP4A_chr19_35545031_35568658	0/0	c0015	3108	2	0	0	2	0	0	copy fasta	ATP4A	chr19	35545031	35568658
ATP4A_chr19_35545031_35568658	0/0	c0016	3109	1	0	0	1	0	0	copy fasta	ATP4A	chr19	35545031	35568658
ATP4A_chr19_35545031_35568658	0/0	c0017	3109	1	1	0	0	0	0	copy fasta	ATP4A	chr19	35545031	35568658
ATP4A_chr19_35545031_35568658	0/0	c0018	3109	1	0	0	1	0	0	copy fasta	ATP4A	chr19	35545031	35568658
ATP4A_chr19_35545031_35568658	0/0	c0019	3109	1	0	0	1	0	0	copy fasta	ATP4A	chr19	35545031	35568658
ATP4A_chr19_35545031_35568658	0/0	c0020	3108	1	0	0	1	0	0	copy fasta	ATP4A	chr19	35545031	35568658
ATP4A_chr19_35545031_35568658	0/0	c0021	3108	1	0	0	1	0	0	copy fasta	ATP4A	chr19	35545031	35568658
ATP4A_chr19_35545031_35568658	0/0	c0022	3108	1	0	0	1	0	0	copy fasta	ATP4A	chr19	35545031	35568658
ATP4A_chr19_35545031_35568658	0/0	c0023	3108	1	0	0	1	0	0	copy fasta	ATP4A	chr19	35545031	35568658
ATP4A_chr19_35545031_35568658	0/0	c0024	3108	1	0	0	1	0	0	copy fasta	ATP4A	chr19	35545031	35568658
ATP4A_chr19_35545031_35568658	0/0	c0025	3108	1	0	0	0	1	0	copy fasta	ATP4A	chr19	35545031	35568658
ATP4A_chr19_35545031_35568658	0/0	c0026	3108	1	1	0	0	0	0	copy fasta	ATP4A	chr19	35545031	35568658
ATP4A_chr19_35545031_35568658	0/0	c0027	3108	1	0	0	1	0	0	copy fasta	ATP4A	chr19	35545031	35568658
ATP4A_chr19_35545031_35568658	0/0	c0028	3108	1	0	0	1	0	0	copy fasta	ATP4A	chr19	35545031	35568658
ATP4A_chr19_35545031_35568658	0/0	c0029	3108	1	0	0	1	0	0	copy fasta	ATP4A	chr19	35545031	35568658
ATP4A_chr19_35545031_35568658	0/0	c0030	3108	1	0	0	1	0	0	copy fasta	ATP4A	chr19	35545031	35568658
ATP4A_chr19_35545031_35568658	0/0	c0031	3128	1	0	0	1	0	0	copy fasta	ATP4A	chr19	35545031	35568658
ATP4A_chr19_35545031_35568658	0/0	c0032	3108	1	1	0	0	0	0	copy fasta	ATP4A	chr19	35545031	35568658
ATP4A_chr19_35545031_35568658	0/0	c0033	3108	1	0	0	1	0	0	copy fasta	ATP4A	chr19	35545031	35568658
ATP4A_chr19_35545031_35568658	0/0	c0034	3108	1	0	0	1	0	0	copy fasta	ATP4A	chr19	35545031	35568658
ATP4B_chr13_113643804_113663198	0/0	c0001	876	181	24	29	105	5	18	copy fasta	ATP4B	chr13	113643804	113663198
ATP4B_chr13_113643804_113663198	1/1	c0002	876	137	33	26	55	10	11	copy fasta	ATP4B	chr13	113643804	113663198
ATP4B_chr13_113643804_113663198	0/0	c0003	876	50	6	16	18	1	9	copy fasta	ATP4B	chr13	113643804	113663198
ATP4B_chr13_113643804_113663198	0/0	c0004	876	46	2	12	23	0	9	copy fasta	ATP4B	chr13	113643804	113663198
ATP4B_chr13_113643804_113663198	0/0	c0005	876	14	13	1	0	0	0	copy fasta	ATP4B	chr13	113643804	113663198
ATP4B_chr13_113643804_113663198	0/0	c0006	876	9	3	3	3	0	0	copy fasta	ATP4B	chr13	113643804	113663198
ATP4B_chr13_113643804_113663198	0/0	c0007	876	5	5	0	0	0	0	copy fasta	ATP4B	chr13	113643804	113663198
ATP4B_chr13_113643804_113663198	0/0	c0008	876	4	4	0	0	0	0	copy fasta	ATP4B	chr13	113643804	113663198
ATP4B_chr13_113643804_113663198	0/0	c0009	876	2	2	0	0	0	0	copy fasta	ATP4B	chr13	113643804	113663198
ATP4B_chr13_113643804_113663198	0/0	c0010	876	1	1	0	0	0	0	copy fasta	ATP4B	chr13	113643804	113663198
ATP4B_chr13_113643804_113663198	0/0	c0011	876	1	1	0	0	0	0	copy fasta	ATP4B	chr13	113643804	113663198