JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SLC26A5_chr7_103369207_103451207	0/0	c0008	2235	1	0	0	1	0	0	copy fasta	SLC26A5	chr7	103369207	103451207
SLC26A5_chr7_103369207_103451207	0/0	c0009	2235	1	0	1	0	0	0	copy fasta	SLC26A5	chr7	103369207	103451207
SLC26A6_chr3_48620723_48640461	1/1	c0001	2280	186	48	34	68	9	25	copy fasta	SLC26A6	chr3	48620723	48640461
SLC26A6_chr3_48620723_48640461	0/0	c0002	2280	52	16	8	22	3	3	copy fasta	SLC26A6	chr3	48620723	48640461
SLC26A6_chr3_48620723_48640461	0/0	c0003	2280	22	22	0	0	0	0	copy fasta	SLC26A6	chr3	48620723	48640461
SLC26A6_chr3_48620723_48640461	0/0	c0004	2280	8	0	1	7	0	0	copy fasta	SLC26A6	chr3	48620723	48640461
SLC26A6_chr3_48620723_48640461	0/0	c0005	2280	2	0	0	2	0	0	copy fasta	SLC26A6	chr3	48620723	48640461
SLC26A6_chr3_48620723_48640461	0/0	c0006	2280	1	0	1	0	0	0	copy fasta	SLC26A6	chr3	48620723	48640461
SLC26A6_chr3_48620723_48640461	0/0	c0007	2280	1	0	0	1	0	0	copy fasta	SLC26A6	chr3	48620723	48640461
SLC26A6_chr3_48620723_48640461	0/0	c0008	2280	1	0	0	1	0	0	copy fasta	SLC26A6	chr3	48620723	48640461
SLC26A6_chr3_48620723_48640461	0/0	c0009	2280	1	0	0	1	0	0	copy fasta	SLC26A6	chr3	48620723	48640461
SLC26A6_chr3_48620723_48640461	0/0	c0010	2280	1	0	0	1	0	0	copy fasta	SLC26A6	chr3	48620723	48640461
SLC26A6_chr3_48620723_48640461	0/0	c0011	2280	1	1	0	0	0	0	copy fasta	SLC26A6	chr3	48620723	48640461
SLC26A6_chr3_48620723_48640461	0/0	c0012	2280	1	0	0	1	0	0	copy fasta	SLC26A6	chr3	48620723	48640461
SLC26A6_chr3_48620723_48640461	0/0	c0013	2280	1	0	0	1	0	0	copy fasta	SLC26A6	chr3	48620723	48640461
SLC26A6_chr3_48620723_48640461	0/0	c0014	2280	1	0	0	1	0	0	copy fasta	SLC26A6	chr3	48620723	48640461
SLC26A6_chr3_48620723_48640461	0/0	c0015	2280	1	1	0	0	0	0	copy fasta	SLC26A6	chr3	48620723	48640461
SLC26A7_chr8_91244319_91403155	1/0	c0001	1971	148	46	40	41	5	15	copy fasta	SLC26A7	chr8	91244319	91403155
SLC26A7_chr8_91244319_91403155	0/0	c0002	1971	44	23	15	1	1	4	copy fasta	SLC26A7	chr8	91244319	91403155
SLC26A7_chr8_91244319_91403155	0/1	c0003	1971	7	3	1	0	2	0	copy fasta	SLC26A7	chr8	91244319	91403155
SLC26A7_chr8_91244319_91403155	0/0	c0004	1971	2	0	0	2	0	0	copy fasta	SLC26A7	chr8	91244319	91403155
SLC26A7_chr8_91244319_91403155	0/0	c0005	1971	2	2	0	0	0	0	copy fasta	SLC26A7	chr8	91244319	91403155
SLC26A7_chr8_91244319_91403155	0/0	c0006	1971	1	1	0	0	0	0	copy fasta	SLC26A7	chr8	91244319	91403155
SLC26A7_chr8_91244319_91403155	0/0	c0007	1971	1	0	0	0	0	1	copy fasta	SLC26A7	chr8	91244319	91403155
SLC26A7_chr8_91244319_91403155	0/0	c0008	1971	1	1	0	0	0	0	copy fasta	SLC26A7	chr8	91244319	91403155
SLC26A7_chr8_91244319_91403155	0/0	c0009	1971	1	1	0	0	0	0	copy fasta	SLC26A7	chr8	91244319	91403155
SLC26A7_chr8_91244319_91403155	0/0	c0010	1971	1	0	0	0	0	1	copy fasta	SLC26A7	chr8	91244319	91403155
SLC26A7_chr8_91244319_91403155	0/0	c0011	1971	1	1	0	0	0	0	copy fasta	SLC26A7	chr8	91244319	91403155
SLC26A7_chr8_91244319_91403155	0/0	c0012	1971	1	0	0	0	0	1	copy fasta	SLC26A7	chr8	91244319	91403155
SLC26A8_chr6_35938516_36029641	1/1	c0001	2913	117	13	23	61	6	12	copy fasta	SLC26A8	chr6	35938516	36029641
SLC26A8_chr6_35938516_36029641	0/0	c0002	2913	66	17	12	31	1	5	copy fasta	SLC26A8	chr6	35938516	36029641
SLC26A8_chr6_35938516_36029641	0/0	c0003	2913	32	19	6	4	1	2	copy fasta	SLC26A8	chr6	35938516	36029641
SLC26A8_chr6_35938516_36029641	0/0	c0004	2913	19	9	2	8	0	0	copy fasta	SLC26A8	chr6	35938516	36029641
SLC26A8_chr6_35938516_36029641	0/0	c0005	2913	18	5	3	7	0	3	copy fasta	SLC26A8	chr6	35938516	36029641
SLC26A8_chr6_35938516_36029641	0/0	c0006	2913	17	0	10	4	3	0	copy fasta	SLC26A8	chr6	35938516	36029641
SLC26A8_chr6_35938516_36029641	0/0	c0007	2913	5	5	0	0	0	0	copy fasta	SLC26A8	chr6	35938516	36029641
SLC26A8_chr6_35938516_36029641	0/0	c0008	2913	4	4	0	0	0	0	copy fasta	SLC26A8	chr6	35938516	36029641
SLC26A8_chr6_35938516_36029641	0/0	c0009	2913	3	2	1	0	0	0	copy fasta	SLC26A8	chr6	35938516	36029641
SLC26A8_chr6_35938516_36029641	0/0	c0010	2913	3	3	0	0	0	0	copy fasta	SLC26A8	chr6	35938516	36029641
SLC26A8_chr6_35938516_36029641	0/0	c0011	2913	2	2	0	0	0	0	copy fasta	SLC26A8	chr6	35938516	36029641
SLC26A8_chr6_35938516_36029641	0/0	c0012	2913	2	0	2	0	0	0	copy fasta	SLC26A8	chr6	35938516	36029641
SLC26A8_chr6_35938516_36029641	0/0	c0013	2913	2	2	0	0	0	0	copy fasta	SLC26A8	chr6	35938516	36029641
SLC26A8_chr6_35938516_36029641	0/0	c0014	2913	1	1	0	0	0	0	copy fasta	SLC26A8	chr6	35938516	36029641
SLC26A8_chr6_35938516_36029641	0/0	c0015	2913	1	1	0	0	0	0	copy fasta	SLC26A8	chr6	35938516	36029641
SLC26A8_chr6_35938516_36029641	0/0	c0016	2913	1	1	0	0	0	0	copy fasta	SLC26A8	chr6	35938516	36029641
SLC26A8_chr6_35938516_36029641	0/0	c0017	2913	1	1	0	0	0	0	copy fasta	SLC26A8	chr6	35938516	36029641
SLC26A8_chr6_35938516_36029641	0/0	c0018	2913	1	0	1	0	0	0	copy fasta	SLC26A8	chr6	35938516	36029641
SLC26A8_chr6_35938516_36029641	0/0	c0019	2913	1	1	0	0	0	0	copy fasta	SLC26A8	chr6	35938516	36029641
SLC26A8_chr6_35938516_36029641	0/0	c0020	2913	1	1	0	0	0	0	copy fasta	SLC26A8	chr6	35938516	36029641
SLC26A8_chr6_35938516_36029641	0/0	c0021	2913	1	1	0	0	0	0	copy fasta	SLC26A8	chr6	35938516	36029641