JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SLC26A8_chr6_35938516_36029641	0/0	c0022	2913	1	0	1	0	0	0	copy fasta	SLC26A8	chr6	35938516	36029641
SLC26A8_chr6_35938516_36029641	0/0	c0023	2913	1	0	1	0	0	0	copy fasta	SLC26A8	chr6	35938516	36029641
SLC26A8_chr6_35938516_36029641	0/0	c0024	2913	1	0	0	0	1	0	copy fasta	SLC26A8	chr6	35938516	36029641
SLC26A8_chr6_35938516_36029641	0/0	c0025	2913	1	1	0	0	0	0	copy fasta	SLC26A8	chr6	35938516	36029641
SLC26A8_chr6_35938516_36029641	0/0	c0026	2913	1	0	0	0	0	1	copy fasta	SLC26A8	chr6	35938516	36029641
SLC26A8_chr6_35938516_36029641	0/0	c0027	2913	1	1	0	0	0	0	copy fasta	SLC26A8	chr6	35938516	36029641
SLC26A8_chr6_35938516_36029641	0/0	c0028	2913	1	0	0	1	0	0	copy fasta	SLC26A8	chr6	35938516	36029641
SLC26A8_chr6_35938516_36029641	0/0	c0029	2913	1	0	0	0	0	1	copy fasta	SLC26A8	chr6	35938516	36029641
SLC26A9_chr1_205908052_205948456	1/1	c0001	2376	316	41	71	157	14	31	copy fasta	SLC26A9	chr1	205908052	205948456
SLC26A9_chr1_205908052_205948456	0/0	c0002	2376	10	10	0	0	0	0	copy fasta	SLC26A9	chr1	205908052	205948456
SLC26A9_chr1_205908052_205948456	0/0	c0003	2376	10	7	0	0	0	3	copy fasta	SLC26A9	chr1	205908052	205948456
SLC26A9_chr1_205908052_205948456	0/0	c0004	2376	10	10	0	0	0	0	copy fasta	SLC26A9	chr1	205908052	205948456
SLC26A9_chr1_205908052_205948456	0/0	c0005	2376	8	7	1	0	0	0	copy fasta	SLC26A9	chr1	205908052	205948456
SLC26A9_chr1_205908052_205948456	0/0	c0006	2376	6	3	3	0	0	0	copy fasta	SLC26A9	chr1	205908052	205948456
SLC26A9_chr1_205908052_205948456	0/0	c0007	2376	5	0	3	0	0	2	copy fasta	SLC26A9	chr1	205908052	205948456
SLC26A9_chr1_205908052_205948456	0/0	c0008	2376	4	4	0	0	0	0	copy fasta	SLC26A9	chr1	205908052	205948456
SLC26A9_chr1_205908052_205948456	0/0	c0009	2376	3	3	0	0	0	0	copy fasta	SLC26A9	chr1	205908052	205948456
SLC26A9_chr1_205908052_205948456	0/0	c0010	2376	2	2	0	0	0	0	copy fasta	SLC26A9	chr1	205908052	205948456
SLC26A9_chr1_205908052_205948456	0/0	c0011	2376	2	0	0	0	0	2	copy fasta	SLC26A9	chr1	205908052	205948456
SLC26A9_chr1_205908052_205948456	0/0	c0012	2376	2	0	0	2	0	0	copy fasta	SLC26A9	chr1	205908052	205948456
SLC26A9_chr1_205908052_205948456	0/0	c0013	2376	2	2	0	0	0	0	copy fasta	SLC26A9	chr1	205908052	205948456
SLC26A9_chr1_205908052_205948456	0/0	c0014	2376	1	0	0	1	0	0	copy fasta	SLC26A9	chr1	205908052	205948456
SLC26A9_chr1_205908052_205948456	0/0	c0015	2376	1	0	0	1	0	0	copy fasta	SLC26A9	chr1	205908052	205948456
SLC26A9_chr1_205908052_205948456	0/0	c0016	2376	1	1	0	0	0	0	copy fasta	SLC26A9	chr1	205908052	205948456
SLC26A9_chr1_205908052_205948456	0/0	c0017	2376	1	0	0	0	0	1	copy fasta	SLC26A9	chr1	205908052	205948456
SLC26A9_chr1_205908052_205948456	0/0	c0018	2376	1	0	0	1	0	0	copy fasta	SLC26A9	chr1	205908052	205948456
SLC26A9_chr1_205908052_205948456	0/0	c0019	2376	1	0	0	1	0	0	copy fasta	SLC26A9	chr1	205908052	205948456
SLC26A9_chr1_205908052_205948456	0/0	c0020	2376	1	0	0	0	0	1	copy fasta	SLC26A9	chr1	205908052	205948456
SLC26A9_chr1_205908052_205948456	0/0	c0021	2376	1	0	0	1	0	0	copy fasta	SLC26A9	chr1	205908052	205948456
SLC26A9_chr1_205908052_205948456	0/0	c0022	2376	1	0	0	1	0	0	copy fasta	SLC26A9	chr1	205908052	205948456
SLC26A9_chr1_205908052_205948456	0/0	c0023	2376	1	0	0	0	0	1	copy fasta	SLC26A9	chr1	205908052	205948456
SLC26A9_chr1_205908052_205948456	0/0	c0024	2376	1	0	1	0	0	0	copy fasta	SLC26A9	chr1	205908052	205948456
SLC26A9_chr1_205908052_205948456	0/0	c0025	2376	1	1	0	0	0	0	copy fasta	SLC26A9	chr1	205908052	205948456
SLC26A9_chr1_205908052_205948456	0/0	c0026	2376	1	0	0	1	0	0	copy fasta	SLC26A9	chr1	205908052	205948456
SLC26A9_chr1_205908052_205948456	0/0	c0027	2376	1	1	0	0	0	0	copy fasta	SLC26A9	chr1	205908052	205948456
SLC26A9_chr1_205908052_205948456	0/0	c0028	2376	1	0	0	1	0	0	copy fasta	SLC26A9	chr1	205908052	205948456
SLC26A9_chr1_205908052_205948456	0/0	c0029	2376	1	1	0	0	0	0	copy fasta	SLC26A9	chr1	205908052	205948456
SLC26A9_chr1_205908052_205948456	0/0	c0030	2376	1	0	1	0	0	0	copy fasta	SLC26A9	chr1	205908052	205948456
SLC26A9_chr1_205908052_205948456	0/0	c0031	2376	1	0	0	0	0	1	copy fasta	SLC26A9	chr1	205908052	205948456
SLC26A9_chr1_205908052_205948456	0/0	c0032	2376	1	1	0	0	0	0	copy fasta	SLC26A9	chr1	205908052	205948456
SLC26A9_chr1_205908052_205948456	0/0	c0033	2376	1	0	0	1	0	0	copy fasta	SLC26A9	chr1	205908052	205948456
SLC27A1_chr19_17465524_17511168	1/1	c0001	1941	337	79	72	132	12	40	copy fasta	SLC27A1	chr19	17465524	17511168
SLC27A1_chr19_17465524_17511168	0/0	c0002	1941	3	3	0	0	0	0	copy fasta	SLC27A1	chr19	17465524	17511168
SLC27A1_chr19_17465524_17511168	0/0	c0003	1941	2	2	0	0	0	0	copy fasta	SLC27A1	chr19	17465524	17511168
SLC27A1_chr19_17465524_17511168	0/0	c0004	1941	2	0	2	0	0	0	copy fasta	SLC27A1	chr19	17465524	17511168
SLC27A1_chr19_17465524_17511168	0/0	c0005	1941	1	0	0	1	0	0	copy fasta	SLC27A1	chr19	17465524	17511168
SLC27A1_chr19_17465524_17511168	0/0	c0006	1960	1	0	0	1	0	0	copy fasta	SLC27A1	chr19	17465524	17511168
SLC27A1_chr19_17465524_17511168	0/0	c0007	1930	1	0	0	1	0	0	copy fasta	SLC27A1	chr19	17465524	17511168
SLC27A1_chr19_17465524_17511168	0/0	c0008	1941	1	0	0	1	0	0	copy fasta	SLC27A1	chr19	17465524	17511168
SLC27A1_chr19_17465524_17511168	0/0	c0009	1941	1	0	0	1	0	0	copy fasta	SLC27A1	chr19	17465524	17511168