JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SLC27A1_chr19_17465524_17511168	0/0	c0010	1941	1	0	0	1	0	0	copy fasta	SLC27A1	chr19	17465524	17511168
SLC27A2_chr15_50177196_50241385	0/1	c0001	1863	213	21	39	119	9	24	copy fasta	SLC27A2	chr15	50177196	50241385
SLC27A2_chr15_50177196_50241385	1/0	c0002	1863	107	47	18	25	5	11	copy fasta	SLC27A2	chr15	50177196	50241385
SLC27A2_chr15_50177196_50241385	0/0	c0003	1863	19	5	6	5	2	1	copy fasta	SLC27A2	chr15	50177196	50241385
SLC27A2_chr15_50177196_50241385	0/0	c0004	1863	4	4	0	0	0	0	copy fasta	SLC27A2	chr15	50177196	50241385
SLC27A2_chr15_50177196_50241385	0/0	c0005	1863	4	4	0	0	0	0	copy fasta	SLC27A2	chr15	50177196	50241385
SLC27A2_chr15_50177196_50241385	0/0	c0006	1863	3	2	1	0	0	0	copy fasta	SLC27A2	chr15	50177196	50241385
SLC27A2_chr15_50177196_50241385	0/0	c0007	1863	2	0	2	0	0	0	copy fasta	SLC27A2	chr15	50177196	50241385
SLC27A2_chr15_50177196_50241385	0/0	c0008	1863	2	0	0	2	0	0	copy fasta	SLC27A2	chr15	50177196	50241385
SLC27A2_chr15_50177196_50241385	0/0	c0009	1863	1	1	0	0	0	0	copy fasta	SLC27A2	chr15	50177196	50241385
SLC27A2_chr15_50177196_50241385	0/0	c0010	1863	1	0	1	0	0	0	copy fasta	SLC27A2	chr15	50177196	50241385
SLC27A2_chr15_50177196_50241385	0/0	c0011	1833	1	1	0	0	0	0	copy fasta	SLC27A2	chr15	50177196	50241385
SLC27A2_chr15_50177196_50241385	0/0	c0012	1863	1	1	0	0	0	0	copy fasta	SLC27A2	chr15	50177196	50241385
SLC27A2_chr15_50177196_50241385	0/0	c0013	1863	1	0	1	0	0	0	copy fasta	SLC27A2	chr15	50177196	50241385
SLC27A2_chr15_50177196_50241385	0/0	c0014	1863	1	0	0	1	0	0	copy fasta	SLC27A2	chr15	50177196	50241385
SLC27A2_chr15_50177196_50241385	0/0	c0015	1863	1	1	0	0	0	0	copy fasta	SLC27A2	chr15	50177196	50241385
SLC27A2_chr15_50177196_50241385	0/0	c0016	1863	1	1	0	0	0	0	copy fasta	SLC27A2	chr15	50177196	50241385
SLC27A3_chr1_153770407_153785157	0/1	c0001	2052	371	63	76	176	15	40	copy fasta	SLC27A3	chr1	153770407	153785157
SLC27A3_chr1_153770407_153785157	0/0	c0002	2052	29	19	3	2	1	4	copy fasta	SLC27A3	chr1	153770407	153785157
SLC27A3_chr1_153770407_153785157	0/0	c0003	2052	10	0	0	10	0	0	copy fasta	SLC27A3	chr1	153770407	153785157
SLC27A3_chr1_153770407_153785157	0/0	c0004	2052	7	7	0	0	0	0	copy fasta	SLC27A3	chr1	153770407	153785157
SLC27A3_chr1_153770407_153785157	0/0	c0005	2052	3	0	3	0	0	0	copy fasta	SLC27A3	chr1	153770407	153785157
SLC27A3_chr1_153770407_153785157	0/0	c0006	2052	3	0	0	3	0	0	copy fasta	SLC27A3	chr1	153770407	153785157
SLC27A3_chr1_153770407_153785157	0/0	c0007	2052	3	3	0	0	0	0	copy fasta	SLC27A3	chr1	153770407	153785157
SLC27A3_chr1_153770407_153785157	0/0	c0008	2052	2	2	0	0	0	0	copy fasta	SLC27A3	chr1	153770407	153785157
SLC27A3_chr1_153770407_153785157	0/0	c0009	2052	2	0	0	2	0	0	copy fasta	SLC27A3	chr1	153770407	153785157
SLC27A3_chr1_153770407_153785157	0/0	c0010	2052	2	0	0	2	0	0	copy fasta	SLC27A3	chr1	153770407	153785157
SLC27A3_chr1_153770407_153785157	0/0	c0011	2052	1	1	0	0	0	0	copy fasta	SLC27A3	chr1	153770407	153785157
SLC27A3_chr1_153770407_153785157	0/0	c0012	2052	1	1	0	0	0	0	copy fasta	SLC27A3	chr1	153770407	153785157
SLC27A3_chr1_153770407_153785157	0/0	c0013	2052	1	0	0	1	0	0	copy fasta	SLC27A3	chr1	153770407	153785157
SLC27A3_chr1_153770407_153785157	0/0	c0014	2052	1	0	0	0	0	1	copy fasta	SLC27A3	chr1	153770407	153785157
SLC27A3_chr1_153770407_153785157	0/0	c0015	2052	1	0	0	1	0	0	copy fasta	SLC27A3	chr1	153770407	153785157
SLC27A3_chr1_153770407_153785157	0/0	c0016	2052	1	0	0	0	0	1	copy fasta	SLC27A3	chr1	153770407	153785157
SLC27A3_chr1_153770407_153785157	0/0	c0017	2052	1	0	0	0	0	1	copy fasta	SLC27A3	chr1	153770407	153785157
SLC27A3_chr1_153770407_153785157	0/0	c0018	2052	1	0	0	1	0	0	copy fasta	SLC27A3	chr1	153770407	153785157
SLC27A3_chr1_153770407_153785157	0/0	c0019	2052	1	1	0	0	0	0	copy fasta	SLC27A3	chr1	153770407	153785157
SLC27A3_chr1_153770407_153785157	0/0	c0020	2052	1	0	1	0	0	0	copy fasta	SLC27A3	chr1	153770407	153785157
SLC27A3_chr1_153770407_153785157	0/0	c0021	2052	1	0	0	1	0	0	copy fasta	SLC27A3	chr1	153770407	153785157
SLC27A3_chr1_153770407_153785157	0/0	c0022	2052	1	0	1	0	0	0	copy fasta	SLC27A3	chr1	153770407	153785157
SLC27A3_chr1_153770407_153785157	0/0	c0023	2052	1	0	0	1	0	0	copy fasta	SLC27A3	chr1	153770407	153785157
SLC27A3_chr1_153770407_153785157	0/0	c0024	2052	1	0	0	0	0	1	copy fasta	SLC27A3	chr1	153770407	153785157
SLC27A3_chr1_153770407_153785157	0/0	c0025	2052	1	0	0	1	0	0	copy fasta	SLC27A3	chr1	153770407	153785157
SLC27A3_chr1_153770407_153785157	0/0	c0026	2052	1	1	0	0	0	0	copy fasta	SLC27A3	chr1	153770407	153785157
SLC27A3_chr1_153770407_153785157	0/0	c0027	2052	1	0	0	1	0	0	copy fasta	SLC27A3	chr1	153770407	153785157
SLC27A4_chr9_128335527_128366470	1/1	c0001	1932	247	61	37	101	14	32	copy fasta	SLC27A4	chr9	128335527	128366470
SLC27A4_chr9_128335527_128366470	0/0	c0002	1932	72	19	4	42	1	6	copy fasta	SLC27A4	chr9	128335527	128366470
SLC27A4_chr9_128335527_128366470	0/0	c0003	1932	4	4	0	0	0	0	copy fasta	SLC27A4	chr9	128335527	128366470
SLC27A4_chr9_128335527_128366470	0/0	c0004	1932	3	0	1	2	0	0	copy fasta	SLC27A4	chr9	128335527	128366470
SLC27A4_chr9_128335527_128366470	0/0	c0005	1932	3	0	0	3	0	0	copy fasta	SLC27A4	chr9	128335527	128366470
SLC27A4_chr9_128335527_128366470	0/0	c0006	1932	2	0	0	2	0	0	copy fasta	SLC27A4	chr9	128335527	128366470