JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SLC27A4_chr9_128335527_128366470	0/0	c0007	1932	1	0	0	1	0	0	copy fasta	SLC27A4	chr9	128335527	128366470
SLC27A4_chr9_128335527_128366470	0/0	c0008	1932	1	0	0	0	0	1	copy fasta	SLC27A4	chr9	128335527	128366470
SLC27A4_chr9_128335527_128366470	0/0	c0009	1932	1	0	0	1	0	0	copy fasta	SLC27A4	chr9	128335527	128366470
SLC27A4_chr9_128335527_128366470	0/0	c0010	1932	1	0	0	1	0	0	copy fasta	SLC27A4	chr9	128335527	128366470
SLC27A4_chr9_128335527_128366470	0/0	c0011	1932	1	0	0	0	0	1	copy fasta	SLC27A4	chr9	128335527	128366470
SLC27A4_chr9_128335527_128366470	0/0	c0012	1932	1	0	0	1	0	0	copy fasta	SLC27A4	chr9	128335527	128366470
SLC27A4_chr9_128335527_128366470	0/0	c0013	1932	1	0	0	1	0	0	copy fasta	SLC27A4	chr9	128335527	128366470
SLC27A4_chr9_128335527_128366470	0/0	c0014	1932	1	0	0	1	0	0	copy fasta	SLC27A4	chr9	128335527	128366470
SLC27A4_chr9_128335527_128366470	0/0	c0015	1932	1	0	0	1	0	0	copy fasta	SLC27A4	chr9	128335527	128366470
SLC27A4_chr9_128335527_128366470	0/0	c0016	1932	1	0	0	0	1	0	copy fasta	SLC27A4	chr9	128335527	128366470
SLC27A4_chr9_128335527_128366470	0/0	c0017	1932	1	1	0	0	0	0	copy fasta	SLC27A4	chr9	128335527	128366470
SLC27A4_chr9_128335527_128366470	0/0	c0018	1932	1	0	0	1	0	0	copy fasta	SLC27A4	chr9	128335527	128366470
SLC27A4_chr9_128335527_128366470	0/0	c0019	1932	1	1	0	0	0	0	copy fasta	SLC27A4	chr9	128335527	128366470
SLC27A5_chr19_58493333_58516992	1/1	c0001	2073	346	63	62	171	14	34	copy fasta	SLC27A5	chr19	58493333	58516992
SLC27A5_chr19_58493333_58516992	0/0	c0002	2073	41	14	11	7	1	8	copy fasta	SLC27A5	chr19	58493333	58516992
SLC27A5_chr19_58493333_58516992	0/0	c0003	2073	6	5	1	0	0	0	copy fasta	SLC27A5	chr19	58493333	58516992
SLC27A5_chr19_58493333_58516992	0/0	c0004	2073	4	4	0	0	0	0	copy fasta	SLC27A5	chr19	58493333	58516992
SLC27A5_chr19_58493333_58516992	0/0	c0005	2073	3	3	0	0	0	0	copy fasta	SLC27A5	chr19	58493333	58516992
SLC27A5_chr19_58493333_58516992	0/0	c0006	2073	3	2	1	0	0	0	copy fasta	SLC27A5	chr19	58493333	58516992
SLC27A5_chr19_58493333_58516992	0/0	c0007	2073	2	2	0	0	0	0	copy fasta	SLC27A5	chr19	58493333	58516992
SLC27A5_chr19_58493333_58516992	0/0	c0008	2073	2	1	1	0	0	0	copy fasta	SLC27A5	chr19	58493333	58516992
SLC27A5_chr19_58493333_58516992	0/0	c0009	2073	2	0	0	2	0	0	copy fasta	SLC27A5	chr19	58493333	58516992
SLC27A5_chr19_58493333_58516992	0/0	c0010	2073	2	0	0	0	2	0	copy fasta	SLC27A5	chr19	58493333	58516992
SLC27A5_chr19_58493333_58516992	0/0	c0011	2073	2	0	0	2	0	0	copy fasta	SLC27A5	chr19	58493333	58516992
SLC27A5_chr19_58493333_58516992	0/0	c0012	2073	1	1	0	0	0	0	copy fasta	SLC27A5	chr19	58493333	58516992
SLC27A5_chr19_58493333_58516992	0/0	c0013	2073	1	0	0	1	0	0	copy fasta	SLC27A5	chr19	58493333	58516992
SLC27A5_chr19_58493333_58516992	0/0	c0014	2073	1	1	0	0	0	0	copy fasta	SLC27A5	chr19	58493333	58516992
SLC27A5_chr19_58493333_58516992	0/0	c0015	2073	1	0	0	0	1	0	copy fasta	SLC27A5	chr19	58493333	58516992
SLC27A5_chr19_58493333_58516992	0/0	c0016	2073	1	0	0	1	0	0	copy fasta	SLC27A5	chr19	58493333	58516992
SLC27A5_chr19_58493333_58516992	0/0	c0017	2073	1	0	0	1	0	0	copy fasta	SLC27A5	chr19	58493333	58516992
SLC27A5_chr19_58493333_58516992	0/0	c0018	2073	1	0	0	0	0	1	copy fasta	SLC27A5	chr19	58493333	58516992
SLC27A5_chr19_58493333_58516992	0/0	c0019	2073	1	0	0	0	0	1	copy fasta	SLC27A5	chr19	58493333	58516992
SLC27A5_chr19_58493333_58516992	0/0	c0020	2034	1	0	0	1	0	0	copy fasta	SLC27A5	chr19	58493333	58516992
SLC27A5_chr19_58493333_58516992	0/0	c0021	2073	1	0	1	0	0	0	copy fasta	SLC27A5	chr19	58493333	58516992
SLC27A5_chr19_58493333_58516992	0/0	c0022	2073	1	0	1	0	0	0	copy fasta	SLC27A5	chr19	58493333	58516992
SLC27A6_chr5_128960488_129038635	1/1	c0001	1860	257	56	42	115	8	34	copy fasta	SLC27A6	chr5	128960488	129038635
SLC27A6_chr5_128960488_129038635	0/0	c0002	1860	54	14	17	12	3	8	copy fasta	SLC27A6	chr5	128960488	129038635
SLC27A6_chr5_128960488_129038635	0/0	c0003	1860	24	18	1	5	0	0	copy fasta	SLC27A6	chr5	128960488	129038635
SLC27A6_chr5_128960488_129038635	0/0	c0004	1860	12	0	5	7	0	0	copy fasta	SLC27A6	chr5	128960488	129038635
SLC27A6_chr5_128960488_129038635	0/0	c0005	1860	2	2	0	0	0	0	copy fasta	SLC27A6	chr5	128960488	129038635
SLC27A6_chr5_128960488_129038635	0/0	c0006	1860	1	1	0	0	0	0	copy fasta	SLC27A6	chr5	128960488	129038635
SLC27A6_chr5_128960488_129038635	0/0	c0007	1860	1	0	1	0	0	0	copy fasta	SLC27A6	chr5	128960488	129038635
SLC27A6_chr5_128960488_129038635	0/0	c0008	1860	1	1	0	0	0	0	copy fasta	SLC27A6	chr5	128960488	129038635
SLC27A6_chr5_128960488_129038635	0/0	c0009	1860	1	0	0	1	0	0	copy fasta	SLC27A6	chr5	128960488	129038635
SLC27A6_chr5_128960488_129038635	0/0	c0010	1860	1	1	0	0	0	0	copy fasta	SLC27A6	chr5	128960488	129038635
SLC27A6_chr5_128960488_129038635	0/0	c0011	1860	1	1	0	0	0	0	copy fasta	SLC27A6	chr5	128960488	129038635
SLC27A6_chr5_128960488_129038635	0/0	c0012	1860	1	1	0	0	0	0	copy fasta	SLC27A6	chr5	128960488	129038635
SLC27A6_chr5_128960488_129038635	0/0	c0013	1860	1	0	0	0	1	0	copy fasta	SLC27A6	chr5	128960488	129038635
SLC27A6_chr5_128960488_129038635	0/0	c0014	1860	1	1	0	0	0	0	copy fasta	SLC27A6	chr5	128960488	129038635
SLC28A1_chr15_84879662_84950798	0/0	c0001	1950	58	2	11	26	3	16	copy fasta	SLC28A1	chr15	84879662	84950798