JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SLC28A1_chr15_84879662_84950798	0/0	c0002	1950	40	10	4	19	3	4	copy fasta	SLC28A1	chr15	84879662	84950798
SLC28A1_chr15_84879662_84950798	0/1	c0003	1950	32	0	0	30	0	1	copy fasta	SLC28A1	chr15	84879662	84950798
SLC28A1_chr15_84879662_84950798	0/0	c0004	1950	29	26	3	0	0	0	copy fasta	SLC28A1	chr15	84879662	84950798
SLC28A1_chr15_84879662_84950798	0/0	c0005	1953	28	4	9	8	2	5	copy fasta	SLC28A1	chr15	84879662	84950798
SLC28A1_chr15_84879662_84950798	0/0	c0006	1950	19	0	3	6	3	7	copy fasta	SLC28A1	chr15	84879662	84950798
SLC28A1_chr15_84879662_84950798	0/0	c0007	1953	19	0	1	18	0	0	copy fasta	SLC28A1	chr15	84879662	84950798
SLC28A1_chr15_84879662_84950798	0/0	c0008	1950	14	0	2	11	0	1	copy fasta	SLC28A1	chr15	84879662	84950798
SLC28A1_chr15_84879662_84950798	0/0	c0009	1953	14	0	12	2	0	0	copy fasta	SLC28A1	chr15	84879662	84950798
SLC28A1_chr15_84879662_84950798	0/0	c0010	1953	11	0	0	11	0	0	copy fasta	SLC28A1	chr15	84879662	84950798
SLC28A1_chr15_84879662_84950798	0/0	c0011	1950	10	0	2	6	2	0	copy fasta	SLC28A1	chr15	84879662	84950798
SLC28A1_chr15_84879662_84950798	0/0	c0012	1950	9	9	0	0	0	0	copy fasta	SLC28A1	chr15	84879662	84950798
SLC28A1_chr15_84879662_84950798	0/0	c0013	1950	8	0	0	8	0	0	copy fasta	SLC28A1	chr15	84879662	84950798
SLC28A1_chr15_84879662_84950798	0/0	c0014	1950	7	0	4	2	0	1	copy fasta	SLC28A1	chr15	84879662	84950798
SLC28A1_chr15_84879662_84950798	0/0	c0015	1953	7	7	0	0	0	0	copy fasta	SLC28A1	chr15	84879662	84950798
SLC28A1_chr15_84879662_84950798	0/0	c0016	1950	6	0	1	4	1	0	copy fasta	SLC28A1	chr15	84879662	84950798
SLC28A1_chr15_84879662_84950798	0/0	c0017	1950	6	0	2	2	1	1	copy fasta	SLC28A1	chr15	84879662	84950798
SLC28A1_chr15_84879662_84950798	0/0	c0018	1953	5	3	2	0	0	0	copy fasta	SLC28A1	chr15	84879662	84950798
SLC28A1_chr15_84879662_84950798	0/0	c0019	1950	4	2	2	0	0	0	copy fasta	SLC28A1	chr15	84879662	84950798
SLC28A1_chr15_84879662_84950798	1/0	c0020	1950	4	0	0	3	0	0	copy fasta	SLC28A1	chr15	84879662	84950798
SLC28A1_chr15_84879662_84950798	0/0	c0021	1950	4	4	0	0	0	0	copy fasta	SLC28A1	chr15	84879662	84950798
SLC28A1_chr15_84879662_84950798	0/0	c0022	1950	3	0	3	0	0	0	copy fasta	SLC28A1	chr15	84879662	84950798
SLC28A1_chr15_84879662_84950798	0/0	c0023	1950	3	0	1	1	0	1	copy fasta	SLC28A1	chr15	84879662	84950798
SLC28A1_chr15_84879662_84950798	0/0	c0024	1950	3	3	0	0	0	0	copy fasta	SLC28A1	chr15	84879662	84950798
SLC28A1_chr15_84879662_84950798	0/0	c0025	1950	2	0	0	2	0	0	copy fasta	SLC28A1	chr15	84879662	84950798
SLC28A1_chr15_84879662_84950798	0/0	c0026	1953	2	0	0	2	0	0	copy fasta	SLC28A1	chr15	84879662	84950798
SLC28A1_chr15_84879662_84950798	0/0	c0027	1950	2	0	0	2	0	0	copy fasta	SLC28A1	chr15	84879662	84950798
SLC28A1_chr15_84879662_84950798	0/0	c0028	1950	2	0	2	0	0	0	copy fasta	SLC28A1	chr15	84879662	84950798
SLC28A1_chr15_84879662_84950798	0/0	c0029	1950	2	0	0	0	0	2	copy fasta	SLC28A1	chr15	84879662	84950798
SLC28A1_chr15_84879662_84950798	0/0	c0030	1950	2	0	0	2	0	0	copy fasta	SLC28A1	chr15	84879662	84950798
SLC28A1_chr15_84879662_84950798	0/0	c0031	1950	2	2	0	0	0	0	copy fasta	SLC28A1	chr15	84879662	84950798
SLC28A1_chr15_84879662_84950798	0/0	c0032	1950	2	2	0	0	0	0	copy fasta	SLC28A1	chr15	84879662	84950798
SLC28A1_chr15_84879662_84950798	0/0	c0033	1950	2	2	0	0	0	0	copy fasta	SLC28A1	chr15	84879662	84950798
SLC28A1_chr15_84879662_84950798	0/0	c0034	1950	2	0	0	2	0	0	copy fasta	SLC28A1	chr15	84879662	84950798
SLC28A1_chr15_84879662_84950798	0/0	c0035	1953	2	0	0	2	0	0	copy fasta	SLC28A1	chr15	84879662	84950798
SLC28A1_chr15_84879662_84950798	0/0	c0036	1953	2	0	1	1	0	0	copy fasta	SLC28A1	chr15	84879662	84950798
SLC28A1_chr15_84879662_84950798	0/0	c0037	1950	2	2	0	0	0	0	copy fasta	SLC28A1	chr15	84879662	84950798
SLC28A1_chr15_84879662_84950798	0/0	c0038	1950	2	2	0	0	0	0	copy fasta	SLC28A1	chr15	84879662	84950798
SLC28A1_chr15_84879662_84950798	0/0	c0039	1953	2	2	0	0	0	0	copy fasta	SLC28A1	chr15	84879662	84950798
SLC28A1_chr15_84879662_84950798	0/0	c0040	1950	1	1	0	0	0	0	copy fasta	SLC28A1	chr15	84879662	84950798
SLC28A1_chr15_84879662_84950798	0/0	c0041	1950	1	0	0	1	0	0	copy fasta	SLC28A1	chr15	84879662	84950798
SLC28A1_chr15_84879662_84950798	0/0	c0042	1950	1	0	0	1	0	0	copy fasta	SLC28A1	chr15	84879662	84950798
SLC28A1_chr15_84879662_84950798	0/0	c0043	1950	1	0	1	0	0	0	copy fasta	SLC28A1	chr15	84879662	84950798
SLC28A1_chr15_84879662_84950798	0/0	c0044	1950	1	1	0	0	0	0	copy fasta	SLC28A1	chr15	84879662	84950798
SLC28A1_chr15_84879662_84950798	0/0	c0045	1950	1	0	0	1	0	0	copy fasta	SLC28A1	chr15	84879662	84950798
SLC28A1_chr15_84879662_84950798	0/0	c0046	1950	1	1	0	0	0	0	copy fasta	SLC28A1	chr15	84879662	84950798
SLC28A1_chr15_84879662_84950798	0/0	c0047	1950	1	1	0	0	0	0	copy fasta	SLC28A1	chr15	84879662	84950798
SLC28A1_chr15_84879662_84950798	0/0	c0048	1950	1	0	1	0	0	0	copy fasta	SLC28A1	chr15	84879662	84950798
SLC28A1_chr15_84879662_84950798	0/0	c0049	1953	1	0	1	0	0	0	copy fasta	SLC28A1	chr15	84879662	84950798
SLC28A1_chr15_84879662_84950798	0/0	c0050	1953	1	0	1	0	0	0	copy fasta	SLC28A1	chr15	84879662	84950798
SLC28A1_chr15_84879662_84950798	0/0	c0051	1953	1	0	0	0	0	1	copy fasta	SLC28A1	chr15	84879662	84950798