JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SLC28A1_chr15_84879662_84950798	0/0	c0052	1953	1	0	0	1	0	0	copy fasta	SLC28A1	chr15	84879662	84950798
SLC28A1_chr15_84879662_84950798	0/0	c0053	1953	1	1	0	0	0	0	copy fasta	SLC28A1	chr15	84879662	84950798
SLC28A1_chr15_84879662_84950798	0/0	c0054	1953	1	0	0	0	1	0	copy fasta	SLC28A1	chr15	84879662	84950798
SLC28A1_chr15_84879662_84950798	0/0	c0055	1953	1	0	1	0	0	0	copy fasta	SLC28A1	chr15	84879662	84950798
SLC28A1_chr15_84879662_84950798	0/0	c0056	1953	1	1	0	0	0	0	copy fasta	SLC28A1	chr15	84879662	84950798
SLC28A1_chr15_84879662_84950798	0/0	c0057	1950	1	1	0	0	0	0	copy fasta	SLC28A1	chr15	84879662	84950798
SLC28A1_chr15_84879662_84950798	0/0	c0058	1950	1	1	0	0	0	0	copy fasta	SLC28A1	chr15	84879662	84950798
SLC28A1_chr15_84879662_84950798	0/0	c0059	1950	1	1	0	0	0	0	copy fasta	SLC28A1	chr15	84879662	84950798
SLC28A1_chr15_84879662_84950798	0/0	c0060	1950	1	1	0	0	0	0	copy fasta	SLC28A1	chr15	84879662	84950798
SLC28A1_chr15_84879662_84950798	0/0	c0061	1953	1	1	0	0	0	0	copy fasta	SLC28A1	chr15	84879662	84950798
SLC28A1_chr15_84879662_84950798	0/0	c0062	1953	1	1	0	0	0	0	copy fasta	SLC28A1	chr15	84879662	84950798
SLC28A2_chr15_45247234_45282846	1/0	c0001	1977	167	26	28	84	3	25	copy fasta	SLC28A2	chr15	45247234	45282846
SLC28A2_chr15_45247234_45282846	0/1	c0002	1977	56	6	23	12	5	9	copy fasta	SLC28A2	chr15	45247234	45282846
SLC28A2_chr15_45247234_45282846	0/0	c0003	1977	31	26	3	0	0	2	copy fasta	SLC28A2	chr15	45247234	45282846
SLC28A2_chr15_45247234_45282846	0/0	c0004	1977	23	21	2	0	0	0	copy fasta	SLC28A2	chr15	45247234	45282846
SLC28A2_chr15_45247234_45282846	0/0	c0005	1977	10	0	3	7	0	0	copy fasta	SLC28A2	chr15	45247234	45282846
SLC28A2_chr15_45247234_45282846	0/0	c0006	1977	8	2	2	4	0	0	copy fasta	SLC28A2	chr15	45247234	45282846
SLC28A2_chr15_45247234_45282846	0/0	c0007	1977	3	3	0	0	0	0	copy fasta	SLC28A2	chr15	45247234	45282846
SLC28A2_chr15_45247234_45282846	0/0	c0008	1977	1	0	0	1	0	0	copy fasta	SLC28A2	chr15	45247234	45282846
SLC28A2_chr15_45247234_45282846	0/0	c0009	1977	1	1	0	0	0	0	copy fasta	SLC28A2	chr15	45247234	45282846
SLC28A2_chr15_45247234_45282846	0/0	c0010	1977	1	0	0	1	0	0	copy fasta	SLC28A2	chr15	45247234	45282846
SLC28A2_chr15_45247234_45282846	0/0	c0011	1977	1	0	1	0	0	0	copy fasta	SLC28A2	chr15	45247234	45282846
SLC28A2_chr15_45247234_45282846	0/0	c0012	1977	1	0	0	1	0	0	copy fasta	SLC28A2	chr15	45247234	45282846
SLC28A2_chr15_45247234_45282846	0/0	c0013	1977	1	1	0	0	0	0	copy fasta	SLC28A2	chr15	45247234	45282846
SLC28A3_chr9_84270457_84345758	1/0	c0001	2076	138	18	25	65	8	21	copy fasta	SLC28A3	chr9	84270457	84345758
SLC28A3_chr9_84270457_84345758	0/0	c0002	2076	88	14	12	53	4	5	copy fasta	SLC28A3	chr9	84270457	84345758
SLC28A3_chr9_84270457_84345758	0/1	c0003	2076	66	21	20	18	1	5	copy fasta	SLC28A3	chr9	84270457	84345758
SLC28A3_chr9_84270457_84345758	0/0	c0004	2076	33	11	4	13	0	5	copy fasta	SLC28A3	chr9	84270457	84345758
SLC28A3_chr9_84270457_84345758	0/0	c0005	2076	9	1	0	8	0	0	copy fasta	SLC28A3	chr9	84270457	84345758
SLC28A3_chr9_84270457_84345758	0/0	c0006	2076	6	5	1	0	0	0	copy fasta	SLC28A3	chr9	84270457	84345758
SLC28A3_chr9_84270457_84345758	0/0	c0007	2076	5	5	0	0	0	0	copy fasta	SLC28A3	chr9	84270457	84345758
SLC28A3_chr9_84270457_84345758	0/0	c0008	2076	5	5	0	0	0	0	copy fasta	SLC28A3	chr9	84270457	84345758
SLC28A3_chr9_84270457_84345758	0/0	c0009	2076	2	1	1	0	0	0	copy fasta	SLC28A3	chr9	84270457	84345758
SLC28A3_chr9_84270457_84345758	0/0	c0010	2076	2	0	1	0	0	1	copy fasta	SLC28A3	chr9	84270457	84345758
SLC28A3_chr9_84270457_84345758	0/0	c0011	2076	2	0	0	1	0	1	copy fasta	SLC28A3	chr9	84270457	84345758
SLC28A3_chr9_84270457_84345758	0/0	c0012	2076	2	0	0	2	0	0	copy fasta	SLC28A3	chr9	84270457	84345758
SLC28A3_chr9_84270457_84345758	0/0	c0013	2076	2	0	0	2	0	0	copy fasta	SLC28A3	chr9	84270457	84345758
SLC28A3_chr9_84270457_84345758	0/0	c0014	2076	1	1	0	0	0	0	copy fasta	SLC28A3	chr9	84270457	84345758
SLC28A3_chr9_84270457_84345758	0/0	c0015	2076	1	0	0	1	0	0	copy fasta	SLC28A3	chr9	84270457	84345758
SLC28A3_chr9_84270457_84345758	0/0	c0016	2076	1	0	0	1	0	0	copy fasta	SLC28A3	chr9	84270457	84345758
SLC28A3_chr9_84270457_84345758	0/0	c0017	2076	1	0	0	0	1	0	copy fasta	SLC28A3	chr9	84270457	84345758
SLC28A3_chr9_84270457_84345758	0/0	c0018	2076	1	1	0	0	0	0	copy fasta	SLC28A3	chr9	84270457	84345758
SLC28A3_chr9_84270457_84345758	0/0	c0019	2076	1	1	0	0	0	0	copy fasta	SLC28A3	chr9	84270457	84345758
SLC29A1_chr6_44218595_44239142	1/1	c0001	1371	416	90	77	186	16	45	copy fasta	SLC29A1	chr6	44218595	44239142
SLC29A1_chr6_44218595_44239142	0/0	c0002	1371	4	4	0	0	0	0	copy fasta	SLC29A1	chr6	44218595	44239142
SLC29A1_chr6_44218595_44239142	0/0	c0003	1371	2	0	0	0	0	2	copy fasta	SLC29A1	chr6	44218595	44239142
SLC29A1_chr6_44218595_44239142	0/0	c0004	1371	1	0	0	0	0	1	copy fasta	SLC29A1	chr6	44218595	44239142
SLC29A1_chr6_44218595_44239142	0/0	c0005	1371	1	1	0	0	0	0	copy fasta	SLC29A1	chr6	44218595	44239142
SLC29A1_chr6_44218595_44239142	0/0	c0006	1371	1	1	0	0	0	0	copy fasta	SLC29A1	chr6	44218595	44239142
SLC29A1_chr6_44218595_44239142	0/0	c0007	1371	1	0	1	0	0	0	copy fasta	SLC29A1	chr6	44218595	44239142