JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SLC29A2_chr11_66357521_66376760	1/1	c0001	1371	384	85	64	179	18	36	copy fasta	SLC29A2	chr11	66357521	66376760
SLC29A2_chr11_66357521_66376760	0/0	c0002	1371	5	5	0	0	0	0	copy fasta	SLC29A2	chr11	66357521	66376760
SLC29A2_chr11_66357521_66376760	0/0	c0003	1371	2	1	0	0	0	1	copy fasta	SLC29A2	chr11	66357521	66376760
SLC29A2_chr11_66357521_66376760	0/0	c0004	1371	2	0	2	0	0	0	copy fasta	SLC29A2	chr11	66357521	66376760
SLC29A2_chr11_66357521_66376760	0/0	c0005	1371	1	0	0	0	0	1	copy fasta	SLC29A2	chr11	66357521	66376760
SLC29A2_chr11_66357521_66376760	0/0	c0006	1371	1	0	0	1	0	0	copy fasta	SLC29A2	chr11	66357521	66376760
SLC29A2_chr11_66357521_66376760	0/0	c0007	1371	1	1	0	0	0	0	copy fasta	SLC29A2	chr11	66357521	66376760
SLC29A2_chr11_66357521_66376760	0/0	c0008	1371	1	0	0	1	0	0	copy fasta	SLC29A2	chr11	66357521	66376760
SLC29A2_chr11_66357521_66376760	0/0	c0009	1371	1	0	0	1	0	0	copy fasta	SLC29A2	chr11	66357521	66376760
SLC29A3_chr10_71314259_71368385	0/1	c0001	1427	92	10	18	40	8	15	copy fasta	SLC29A3	chr10	71314259	71368385
SLC29A3_chr10_71314259_71368385	0/0	c0002	1427	71	20	18	21	3	9	copy fasta	SLC29A3	chr10	71314259	71368385
SLC29A3_chr10_71314259_71368385	1/0	c0003	1427	58	1	15	32	2	7	copy fasta	SLC29A3	chr10	71314259	71368385
SLC29A3_chr10_71314259_71368385	0/0	c0004	1427	53	14	4	31	0	4	copy fasta	SLC29A3	chr10	71314259	71368385
SLC29A3_chr10_71314259_71368385	0/0	c0005	1427	36	7	5	21	0	3	copy fasta	SLC29A3	chr10	71314259	71368385
SLC29A3_chr10_71314259_71368385	0/0	c0006	1427	19	4	0	13	0	2	copy fasta	SLC29A3	chr10	71314259	71368385
SLC29A3_chr10_71314259_71368385	0/0	c0007	1427	9	7	2	0	0	0	copy fasta	SLC29A3	chr10	71314259	71368385
SLC29A3_chr10_71314259_71368385	0/0	c0008	1427	9	0	0	9	0	0	copy fasta	SLC29A3	chr10	71314259	71368385
SLC29A3_chr10_71314259_71368385	0/0	c0009	1427	9	0	1	7	1	0	copy fasta	SLC29A3	chr10	71314259	71368385
SLC29A3_chr10_71314259_71368385	0/0	c0010	1427	7	6	1	0	0	0	copy fasta	SLC29A3	chr10	71314259	71368385
SLC29A3_chr10_71314259_71368385	0/0	c0011	1427	6	6	0	0	0	0	copy fasta	SLC29A3	chr10	71314259	71368385
SLC29A3_chr10_71314259_71368385	0/0	c0012	1427	5	4	1	0	0	0	copy fasta	SLC29A3	chr10	71314259	71368385
SLC29A3_chr10_71314259_71368385	0/0	c0013	1427	4	1	3	0	0	0	copy fasta	SLC29A3	chr10	71314259	71368385
SLC29A3_chr10_71314259_71368385	0/0	c0014	1427	2	2	0	0	0	0	copy fasta	SLC29A3	chr10	71314259	71368385
SLC29A3_chr10_71314259_71368385	0/0	c0015	1427	2	2	0	0	0	0	copy fasta	SLC29A3	chr10	71314259	71368385
SLC29A3_chr10_71314259_71368385	0/0	c0016	1427	2	2	0	0	0	0	copy fasta	SLC29A3	chr10	71314259	71368385
SLC29A3_chr10_71314259_71368385	0/0	c0017	1427	2	1	1	0	0	0	copy fasta	SLC29A3	chr10	71314259	71368385
SLC29A3_chr10_71314259_71368385	0/0	c0018	1427	2	1	1	0	0	0	copy fasta	SLC29A3	chr10	71314259	71368385
SLC29A3_chr10_71314259_71368385	0/0	c0019	1427	2	0	1	1	0	0	copy fasta	SLC29A3	chr10	71314259	71368385
SLC29A3_chr10_71314259_71368385	0/0	c0020	1427	1	0	0	1	0	0	copy fasta	SLC29A3	chr10	71314259	71368385
SLC29A3_chr10_71314259_71368385	0/0	c0021	1427	1	0	0	1	0	0	copy fasta	SLC29A3	chr10	71314259	71368385
SLC29A3_chr10_71314259_71368385	0/0	c0022	1427	1	0	1	0	0	0	copy fasta	SLC29A3	chr10	71314259	71368385
SLC29A3_chr10_71314259_71368385	0/0	c0023	1427	1	1	0	0	0	0	copy fasta	SLC29A3	chr10	71314259	71368385
SLC29A3_chr10_71314259_71368385	0/0	c0024	1427	1	1	0	0	0	0	copy fasta	SLC29A3	chr10	71314259	71368385
SLC29A3_chr10_71314259_71368385	0/0	c0025	1427	1	0	0	1	0	0	copy fasta	SLC29A3	chr10	71314259	71368385
SLC29A3_chr10_71314259_71368385	0/0	c0026	1427	1	0	0	1	0	0	copy fasta	SLC29A3	chr10	71314259	71368385
SLC29A3_chr10_71314259_71368385	0/0	c0027	1427	1	0	0	1	0	0	copy fasta	SLC29A3	chr10	71314259	71368385
SLC29A3_chr10_71314259_71368385	0/0	c0028	1427	1	0	0	1	0	0	copy fasta	SLC29A3	chr10	71314259	71368385
SLC29A3_chr10_71314259_71368385	0/0	c0029	1427	1	0	0	1	0	0	copy fasta	SLC29A3	chr10	71314259	71368385
SLC29A3_chr10_71314259_71368385	0/0	c0030	1427	1	0	1	0	0	0	copy fasta	SLC29A3	chr10	71314259	71368385
SLC29A3_chr10_71314259_71368385	0/0	c0031	1427	1	0	0	0	0	1	copy fasta	SLC29A3	chr10	71314259	71368385
SLC29A3_chr10_71314259_71368385	0/0	c0032	1427	1	1	0	0	0	0	copy fasta	SLC29A3	chr10	71314259	71368385
SLC29A3_chr10_71314259_71368385	0/0	c0033	1427	1	1	0	0	0	0	copy fasta	SLC29A3	chr10	71314259	71368385
SLC29A3_chr10_71314259_71368385	0/0	c0034	1427	1	1	0	0	0	0	copy fasta	SLC29A3	chr10	71314259	71368385
SLC29A3_chr10_71314259_71368385	0/0	c0035	1427	1	0	0	0	0	1	copy fasta	SLC29A3	chr10	71314259	71368385
SLC29A3_chr10_71314259_71368385	0/0	c0036	1427	1	0	0	1	0	0	copy fasta	SLC29A3	chr10	71314259	71368385
SLC29A3_chr10_71314259_71368385	0/0	c0037	1427	1	0	1	0	0	0	copy fasta	SLC29A3	chr10	71314259	71368385
SLC29A3_chr10_71314259_71368385	0/0	c0038	1427	1	1	0	0	0	0	copy fasta	SLC29A3	chr10	71314259	71368385
SLC29A3_chr10_71314259_71368385	0/0	c0039	1444	1	0	0	1	0	0	copy fasta	SLC29A3	chr10	71314259	71368385
SLC29A4_chr7_5277943_5311912	1/0	c0001	1593	214	29	43	103	7	31	copy fasta	SLC29A4	chr7	5277943	5311912
SLC29A4_chr7_5277943_5311912	0/1	c0002	1593	95	33	29	13	7	12	copy fasta	SLC29A4	chr7	5277943	5311912