JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SLC29A4_chr7_5277943_5311912	0/0	c0003	1593	39	7	1	28	1	2	copy fasta	SLC29A4	chr7	5277943	5311912
SLC29A4_chr7_5277943_5311912	0/0	c0004	1593	10	1	8	0	1	0	copy fasta	SLC29A4	chr7	5277943	5311912
SLC29A4_chr7_5277943_5311912	0/0	c0005	1593	6	0	0	6	0	0	copy fasta	SLC29A4	chr7	5277943	5311912
SLC29A4_chr7_5277943_5311912	0/0	c0006	1593	4	4	0	0	0	0	copy fasta	SLC29A4	chr7	5277943	5311912
SLC29A4_chr7_5277943_5311912	0/0	c0007	1593	4	4	0	0	0	0	copy fasta	SLC29A4	chr7	5277943	5311912
SLC29A4_chr7_5277943_5311912	0/0	c0008	1593	4	0	2	0	2	0	copy fasta	SLC29A4	chr7	5277943	5311912
SLC29A4_chr7_5277943_5311912	0/0	c0009	1593	4	0	0	4	0	0	copy fasta	SLC29A4	chr7	5277943	5311912
SLC29A4_chr7_5277943_5311912	0/0	c0010	1593	4	4	0	0	0	0	copy fasta	SLC29A4	chr7	5277943	5311912
SLC29A4_chr7_5277943_5311912	0/0	c0011	1593	3	2	1	0	0	0	copy fasta	SLC29A4	chr7	5277943	5311912
SLC29A4_chr7_5277943_5311912	0/0	c0012	1593	3	3	0	0	0	0	copy fasta	SLC29A4	chr7	5277943	5311912
SLC29A4_chr7_5277943_5311912	0/0	c0013	1593	3	0	0	3	0	0	copy fasta	SLC29A4	chr7	5277943	5311912
SLC29A4_chr7_5277943_5311912	0/0	c0014	1593	3	3	0	0	0	0	copy fasta	SLC29A4	chr7	5277943	5311912
SLC29A4_chr7_5277943_5311912	0/0	c0015	1593	2	2	0	0	0	0	copy fasta	SLC29A4	chr7	5277943	5311912
SLC29A4_chr7_5277943_5311912	0/0	c0016	1593	2	2	0	0	0	0	copy fasta	SLC29A4	chr7	5277943	5311912
SLC29A4_chr7_5277943_5311912	0/0	c0017	1593	1	0	0	1	0	0	copy fasta	SLC29A4	chr7	5277943	5311912
SLC29A4_chr7_5277943_5311912	0/0	c0018	1593	1	0	0	1	0	0	copy fasta	SLC29A4	chr7	5277943	5311912
SLC29A4_chr7_5277943_5311912	0/0	c0019	1593	1	1	0	0	0	0	copy fasta	SLC29A4	chr7	5277943	5311912
SLC29A4_chr7_5277943_5311912	0/0	c0020	1593	1	0	0	0	0	1	copy fasta	SLC29A4	chr7	5277943	5311912
SLC29A4_chr7_5277943_5311912	0/0	c0021	1593	1	1	0	0	0	0	copy fasta	SLC29A4	chr7	5277943	5311912
SLC29A4_chr7_5277943_5311912	0/0	c0022	1593	1	1	0	0	0	0	copy fasta	SLC29A4	chr7	5277943	5311912
SLC29A4_chr7_5277943_5311912	0/0	c0023	1593	1	1	0	0	0	0	copy fasta	SLC29A4	chr7	5277943	5311912
SLC29A4_chr7_5277943_5311912	0/0	c0024	1593	1	0	0	1	0	0	copy fasta	SLC29A4	chr7	5277943	5311912
SLC2A10_chr20_46704649_46741347	1/1	c0001	1626	271	38	51	145	13	22	copy fasta	SLC2A10	chr20	46704649	46741347
SLC2A10_chr20_46704649_46741347	0/0	c0002	1626	38	2	7	21	0	8	copy fasta	SLC2A10	chr20	46704649	46741347
SLC2A10_chr20_46704649_46741347	0/0	c0003	1626	24	22	2	0	0	0	copy fasta	SLC2A10	chr20	46704649	46741347
SLC2A10_chr20_46704649_46741347	0/0	c0004	1626	5	0	1	0	0	4	copy fasta	SLC2A10	chr20	46704649	46741347
SLC2A10_chr20_46704649_46741347	0/0	c0005	1626	3	2	0	0	0	1	copy fasta	SLC2A10	chr20	46704649	46741347
SLC2A10_chr20_46704649_46741347	0/0	c0006	1626	3	2	1	0	0	0	copy fasta	SLC2A10	chr20	46704649	46741347
SLC2A10_chr20_46704649_46741347	0/0	c0007	1626	3	3	0	0	0	0	copy fasta	SLC2A10	chr20	46704649	46741347
SLC2A10_chr20_46704649_46741347	0/0	c0008	1626	2	2	0	0	0	0	copy fasta	SLC2A10	chr20	46704649	46741347
SLC2A10_chr20_46704649_46741347	0/0	c0009	1626	2	0	1	0	1	0	copy fasta	SLC2A10	chr20	46704649	46741347
SLC2A10_chr20_46704649_46741347	0/0	c0010	1626	2	2	0	0	0	0	copy fasta	SLC2A10	chr20	46704649	46741347
SLC2A10_chr20_46704649_46741347	0/0	c0011	1626	1	0	1	0	0	0	copy fasta	SLC2A10	chr20	46704649	46741347
SLC2A10_chr20_46704649_46741347	0/0	c0012	1626	1	1	0	0	0	0	copy fasta	SLC2A10	chr20	46704649	46741347
SLC2A10_chr20_46704649_46741347	0/0	c0013	1626	1	1	0	0	0	0	copy fasta	SLC2A10	chr20	46704649	46741347
SLC2A10_chr20_46704649_46741347	0/0	c0014	1626	1	0	1	0	0	0	copy fasta	SLC2A10	chr20	46704649	46741347
SLC2A10_chr20_46704649_46741347	0/0	c0015	1626	1	0	1	0	0	0	copy fasta	SLC2A10	chr20	46704649	46741347
SLC2A10_chr20_46704649_46741347	0/0	c0016	1626	1	1	0	0	0	0	copy fasta	SLC2A10	chr20	46704649	46741347
SLC2A10_chr20_46704649_46741347	0/0	c0017	1626	1	1	0	0	0	0	copy fasta	SLC2A10	chr20	46704649	46741347
SLC2A10_chr20_46704649_46741347	0/0	c0018	1626	1	0	0	0	0	1	copy fasta	SLC2A10	chr20	46704649	46741347
SLC2A10_chr20_46704649_46741347	0/0	c0019	1626	1	1	0	0	0	0	copy fasta	SLC2A10	chr20	46704649	46741347
SLC2A11_chr22_23852875_23891312	0/0	c0001	1500	245	53	47	112	7	26	copy fasta	SLC2A11	chr22	23852875	23891312
SLC2A11_chr22_23852875_23891312	0/1	c0002	1500	133	24	23	62	3	20	copy fasta	SLC2A11	chr22	23852875	23891312
SLC2A11_chr22_23852875_23891312	0/0	c0003	1500	10	4	5	0	1	0	copy fasta	SLC2A11	chr22	23852875	23891312
SLC2A11_chr22_23852875_23891312	0/0	c0004	1500	7	7	0	0	0	0	copy fasta	SLC2A11	chr22	23852875	23891312
SLC2A11_chr22_23852875_23891312	0/0	c0005	1500	4	4	0	0	0	0	copy fasta	SLC2A11	chr22	23852875	23891312
SLC2A11_chr22_23852875_23891312	0/0	c0006	1500	3	0	2	0	1	0	copy fasta	SLC2A11	chr22	23852875	23891312
SLC2A11_chr22_23852875_23891312	0/0	c0007	1500	3	0	0	2	0	1	copy fasta	SLC2A11	chr22	23852875	23891312
SLC2A11_chr22_23852875_23891312	0/0	c0008	1500	2	1	1	0	0	0	copy fasta	SLC2A11	chr22	23852875	23891312
SLC2A11_chr22_23852875_23891312	0/0	c0009	1500	2	0	0	0	0	2	copy fasta	SLC2A11	chr22	23852875	23891312