JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SLC2A11_chr22_23852875_23891312	0/0	c0010	1500	2	0	0	2	0	0	copy fasta	SLC2A11	chr22	23852875	23891312
SLC2A11_chr22_23852875_23891312	0/0	c0011	1500	1	1	0	0	0	0	copy fasta	SLC2A11	chr22	23852875	23891312
SLC2A11_chr22_23852875_23891312	0/0	c0012	1500	1	0	0	1	0	0	copy fasta	SLC2A11	chr22	23852875	23891312
SLC2A11_chr22_23852875_23891312	0/0	c0013	1500	1	0	0	0	0	1	copy fasta	SLC2A11	chr22	23852875	23891312
SLC2A11_chr22_23852875_23891312	0/0	c0014	1500	1	0	0	1	0	0	copy fasta	SLC2A11	chr22	23852875	23891312
SLC2A12_chr6_133982581_134057624	1/1	c0001	1854	320	82	61	135	10	30	copy fasta	SLC2A12	chr6	133982581	134057624
SLC2A12_chr6_133982581_134057624	0/0	c0002	1854	5	0	5	0	0	0	copy fasta	SLC2A12	chr6	133982581	134057624
SLC2A12_chr6_133982581_134057624	0/0	c0003	1854	5	5	0	0	0	0	copy fasta	SLC2A12	chr6	133982581	134057624
SLC2A12_chr6_133982581_134057624	0/0	c0004	1854	1	1	0	0	0	0	copy fasta	SLC2A12	chr6	133982581	134057624
SLC2A12_chr6_133982581_134057624	0/0	c0005	1854	1	0	0	1	0	0	copy fasta	SLC2A12	chr6	133982581	134057624
SLC2A12_chr6_133982581_134057624	0/0	c0006	1854	1	1	0	0	0	0	copy fasta	SLC2A12	chr6	133982581	134057624
SLC2A12_chr6_133982581_134057624	0/0	c0007	1854	1	0	0	1	0	0	copy fasta	SLC2A12	chr6	133982581	134057624
SLC2A12_chr6_133982581_134057624	0/0	c0008	1854	1	0	0	1	0	0	copy fasta	SLC2A12	chr6	133982581	134057624
SLC2A12_chr6_133982581_134057624	0/0	c0009	1854	1	1	0	0	0	0	copy fasta	SLC2A12	chr6	133982581	134057624
SLC2A12_chr6_133982581_134057624	0/0	c0010	1854	1	1	0	0	0	0	copy fasta	SLC2A12	chr6	133982581	134057624
SLC2A12_chr6_133982581_134057624	0/0	c0011	1854	1	1	0	0	0	0	copy fasta	SLC2A12	chr6	133982581	134057624
SLC2A13_chr12_39750025_40111081	1/1	c0001	1947	195	49	36	89	3	16	copy fasta	SLC2A13	chr12	39750025	40111081
SLC2A13_chr12_39750025_40111081	0/0	c0002	1947	11	2	3	3	1	2	copy fasta	SLC2A13	chr12	39750025	40111081
SLC2A13_chr12_39750025_40111081	0/0	c0003	1947	4	0	0	4	0	0	copy fasta	SLC2A13	chr12	39750025	40111081
SLC2A13_chr12_39750025_40111081	0/0	c0004	1947	3	0	1	0	0	2	copy fasta	SLC2A13	chr12	39750025	40111081
SLC2A13_chr12_39750025_40111081	0/0	c0005	1947	1	1	0	0	0	0	copy fasta	SLC2A13	chr12	39750025	40111081
SLC2A14_chr12_7807514_7877915	0/0	c0001	1494	70	5	13	35	4	13	copy fasta	SLC2A14	chr12	7807514	7877915
SLC2A14_chr12_7807514_7877915	0/0	c0002	1494	61	3	25	19	6	8	copy fasta	SLC2A14	chr12	7807514	7877915
SLC2A14_chr12_7807514_7877915	0/0	c0003	1494	53	24	1	24	0	4	copy fasta	SLC2A14	chr12	7807514	7877915
SLC2A14_chr12_7807514_7877915	1/0	c0004	1494	51	24	15	0	4	7	copy fasta	SLC2A14	chr12	7807514	7877915
SLC2A14_chr12_7807514_7877915	0/1	c0005	1494	40	9	5	24	0	1	copy fasta	SLC2A14	chr12	7807514	7877915
SLC2A14_chr12_7807514_7877915	0/0	c0006	1494	25	10	4	11	0	0	copy fasta	SLC2A14	chr12	7807514	7877915
SLC2A14_chr12_7807514_7877915	0/0	c0007	1494	17	8	1	7	0	1	copy fasta	SLC2A14	chr12	7807514	7877915
SLC2A14_chr12_7807514_7877915	0/0	c0008	1494	15	0	0	13	0	2	copy fasta	SLC2A14	chr12	7807514	7877915
SLC2A14_chr12_7807514_7877915	0/0	c0009	1494	6	0	0	6	0	0	copy fasta	SLC2A14	chr12	7807514	7877915
SLC2A14_chr12_7807514_7877915	0/0	c0010	1494	4	0	0	4	0	0	copy fasta	SLC2A14	chr12	7807514	7877915
SLC2A14_chr12_7807514_7877915	0/0	c0011	1494	2	2	0	0	0	0	copy fasta	SLC2A14	chr12	7807514	7877915
SLC2A14_chr12_7807514_7877915	0/0	c0012	1494	1	1	0	0	0	0	copy fasta	SLC2A14	chr12	7807514	7877915
SLC2A14_chr12_7807514_7877915	0/0	c0013	1494	1	1	0	0	0	0	copy fasta	SLC2A14	chr12	7807514	7877915
SLC2A14_chr12_7807514_7877915	0/0	c0014	1494	1	1	0	0	0	0	copy fasta	SLC2A14	chr12	7807514	7877915
SLC2A14_chr12_7807514_7877915	0/0	c0015	1494	1	1	0	0	0	0	copy fasta	SLC2A14	chr12	7807514	7877915
SLC2A14_chr12_7807514_7877915	0/0	c0016	1494	1	1	0	0	0	0	copy fasta	SLC2A14	chr12	7807514	7877915
SLC2A14_chr12_7807514_7877915	0/0	c0017	1494	1	0	0	1	0	0	copy fasta	SLC2A14	chr12	7807514	7877915
SLC2A1_chr1_42920353_42963868	1/0	c0001	1479	225	32	40	113	6	33	copy fasta	SLC2A1	chr1	42920353	42963868
SLC2A1_chr1_42920353_42963868	0/0	c0002	1479	60	8	10	38	2	2	copy fasta	SLC2A1	chr1	42920353	42963868
SLC2A1_chr1_42920353_42963868	0/0	c0003	1479	27	26	1	0	0	0	copy fasta	SLC2A1	chr1	42920353	42963868
SLC2A1_chr1_42920353_42963868	0/0	c0004	1479	26	0	12	7	0	7	copy fasta	SLC2A1	chr1	42920353	42963868
SLC2A1_chr1_42920353_42963868	0/0	c0005	1479	12	10	1	1	0	0	copy fasta	SLC2A1	chr1	42920353	42963868
SLC2A1_chr1_42920353_42963868	0/1	c0006	1479	8	0	1	4	0	2	copy fasta	SLC2A1	chr1	42920353	42963868
SLC2A1_chr1_42920353_42963868	0/0	c0007	1479	7	0	0	7	0	0	copy fasta	SLC2A1	chr1	42920353	42963868
SLC2A1_chr1_42920353_42963868	0/0	c0008	1479	5	5	0	0	0	0	copy fasta	SLC2A1	chr1	42920353	42963868
SLC2A1_chr1_42920353_42963868	0/0	c0009	1479	5	0	0	4	0	1	copy fasta	SLC2A1	chr1	42920353	42963868
SLC2A1_chr1_42920353_42963868	0/0	c0010	1479	4	4	0	0	0	0	copy fasta	SLC2A1	chr1	42920353	42963868
SLC2A1_chr1_42920353_42963868	0/0	c0011	1479	3	3	0	0	0	0	copy fasta	SLC2A1	chr1	42920353	42963868
SLC2A1_chr1_42920353_42963868	0/0	c0012	1479	2	0	0	2	0	0	copy fasta	SLC2A1	chr1	42920353	42963868