JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SLC2A1_chr1_42920353_42963868	0/0	c0013	1479	2	0	0	2	0	0	copy fasta	SLC2A1	chr1	42920353	42963868
SLC2A1_chr1_42920353_42963868	0/0	c0014	1479	1	0	1	0	0	0	copy fasta	SLC2A1	chr1	42920353	42963868
SLC2A1_chr1_42920353_42963868	0/0	c0015	1479	1	0	1	0	0	0	copy fasta	SLC2A1	chr1	42920353	42963868
SLC2A1_chr1_42920353_42963868	0/0	c0016	1479	1	1	0	0	0	0	copy fasta	SLC2A1	chr1	42920353	42963868
SLC2A1_chr1_42920353_42963868	0/0	c0017	1479	1	0	0	0	0	1	copy fasta	SLC2A1	chr1	42920353	42963868
SLC2A1_chr1_42920353_42963868	0/0	c0018	1479	1	0	0	1	0	0	copy fasta	SLC2A1	chr1	42920353	42963868
SLC2A1_chr1_42920353_42963868	0/0	c0019	1479	1	1	0	0	0	0	copy fasta	SLC2A1	chr1	42920353	42963868
SLC2A1_chr1_42920353_42963868	0/0	c0020	1479	1	0	1	0	0	0	copy fasta	SLC2A1	chr1	42920353	42963868
SLC2A1_chr1_42920353_42963868	0/0	c0021	1479	1	0	1	0	0	0	copy fasta	SLC2A1	chr1	42920353	42963868
SLC2A1_chr1_42920353_42963868	0/0	c0022	1479	1	0	1	0	0	0	copy fasta	SLC2A1	chr1	42920353	42963868
SLC2A1_chr1_42920353_42963868	0/0	c0023	1479	1	0	0	1	0	0	copy fasta	SLC2A1	chr1	42920353	42963868
SLC2A2_chr3_170991347_171031720	1/1	c0001	1575	137	22	23	73	3	14	copy fasta	SLC2A2	chr3	170991347	171031720
SLC2A2_chr3_170991347_171031720	0/0	c0002	1575	90	21	11	50	2	6	copy fasta	SLC2A2	chr3	170991347	171031720
SLC2A2_chr3_170991347_171031720	0/0	c0003	1575	58	27	14	5	3	9	copy fasta	SLC2A2	chr3	170991347	171031720
SLC2A2_chr3_170991347_171031720	0/0	c0004	1575	24	21	3	0	0	0	copy fasta	SLC2A2	chr3	170991347	171031720
SLC2A2_chr3_170991347_171031720	0/0	c0005	1575	4	4	0	0	0	0	copy fasta	SLC2A2	chr3	170991347	171031720
SLC2A2_chr3_170991347_171031720	0/0	c0006	1575	3	0	0	3	0	0	copy fasta	SLC2A2	chr3	170991347	171031720
SLC2A2_chr3_170991347_171031720	0/0	c0007	1575	3	0	0	3	0	0	copy fasta	SLC2A2	chr3	170991347	171031720
SLC2A2_chr3_170991347_171031720	0/0	c0008	1575	2	0	1	1	0	0	copy fasta	SLC2A2	chr3	170991347	171031720
SLC2A2_chr3_170991347_171031720	0/0	c0009	1575	1	0	1	0	0	0	copy fasta	SLC2A2	chr3	170991347	171031720
SLC2A2_chr3_170991347_171031720	0/0	c0010	1575	1	0	0	1	0	0	copy fasta	SLC2A2	chr3	170991347	171031720
SLC2A2_chr3_170991347_171031720	0/0	c0011	1575	1	0	0	1	0	0	copy fasta	SLC2A2	chr3	170991347	171031720
SLC2A2_chr3_170991347_171031720	0/0	c0012	1575	1	1	0	0	0	0	copy fasta	SLC2A2	chr3	170991347	171031720
SLC2A2_chr3_170991347_171031720	0/0	c0013	1575	1	0	1	0	0	0	copy fasta	SLC2A2	chr3	170991347	171031720
SLC2A2_chr3_170991347_171031720	0/0	c0014	1575	1	0	0	0	0	1	copy fasta	SLC2A2	chr3	170991347	171031720
SLC2A2_chr3_170991347_171031720	0/0	c0015	1575	1	0	0	1	0	0	copy fasta	SLC2A2	chr3	170991347	171031720
SLC2A3_chr12_7914230_7941187	1/1	c0001	1491	221	45	32	115	4	23	copy fasta	SLC2A3	chr12	7914230	7941187
SLC2A3_chr12_7914230_7941187	0/0	c0002	1491	112	21	23	42	7	19	copy fasta	SLC2A3	chr12	7914230	7941187
SLC2A3_chr12_7914230_7941187	0/0	c0003	1491	63	7	12	37	3	4	copy fasta	SLC2A3	chr12	7914230	7941187
SLC2A3_chr12_7914230_7941187	0/0	c0004	1491	13	10	3	0	0	0	copy fasta	SLC2A3	chr12	7914230	7941187
SLC2A3_chr12_7914230_7941187	0/0	c0005	1491	2	2	0	0	0	0	copy fasta	SLC2A3	chr12	7914230	7941187
SLC2A3_chr12_7914230_7941187	0/0	c0006	1491	2	0	2	0	0	0	copy fasta	SLC2A3	chr12	7914230	7941187
SLC2A3_chr12_7914230_7941187	0/0	c0007	1491	1	0	0	0	0	1	copy fasta	SLC2A3	chr12	7914230	7941187
SLC2A3_chr12_7914230_7941187	0/0	c0008	1491	1	0	0	1	0	0	copy fasta	SLC2A3	chr12	7914230	7941187
SLC2A3_chr12_7914230_7941187	0/0	c0009	1491	1	1	0	0	0	0	copy fasta	SLC2A3	chr12	7914230	7941187
SLC2A3_chr12_7914230_7941187	0/0	c0010	1491	1	0	0	0	0	1	copy fasta	SLC2A3	chr12	7914230	7941187
SLC2A3_chr12_7914230_7941187	0/0	c0011	1491	1	1	0	0	0	0	copy fasta	SLC2A3	chr12	7914230	7941187
SLC2A3_chr12_7914230_7941187	0/0	c0012	1491	1	1	0	0	0	0	copy fasta	SLC2A3	chr12	7914230	7941187
SLC2A3_chr12_7914230_7941187	0/0	c0013	1491	1	0	0	1	0	0	copy fasta	SLC2A3	chr12	7914230	7941187
SLC2A4RG_chr20_63734776_63749050	0/0	c0001	1164	271	80	65	76	14	36	copy fasta	SLC2A4RG	chr20	63734776	63749050
SLC2A4RG_chr20_63734776_63749050	0/0	c0002	1164	117	1	12	91	3	10	copy fasta	SLC2A4RG	chr20	63734776	63749050
SLC2A4RG_chr20_63734776_63749050	0/0	c0003	1164	13	13	0	0	0	0	copy fasta	SLC2A4RG	chr20	63734776	63749050
SLC2A4RG_chr20_63734776_63749050	1/1	c0004	1164	12	0	5	2	1	2	copy fasta	SLC2A4RG	chr20	63734776	63749050
SLC2A4RG_chr20_63734776_63749050	0/0	c0005	1164	1	1	0	0	0	0	copy fasta	SLC2A4RG	chr20	63734776	63749050
SLC2A4RG_chr20_63734776_63749050	0/0	c0006	1164	1	0	0	1	0	0	copy fasta	SLC2A4RG	chr20	63734776	63749050
SLC2A4RG_chr20_63734776_63749050	0/0	c0007	1164	1	1	0	0	0	0	copy fasta	SLC2A4RG	chr20	63734776	63749050
SLC2A4_chr17_7276718_7293257	0/0	c0001	1530	306	79	50	138	10	29	copy fasta	SLC2A4	chr17	7276718	7293257
SLC2A4_chr17_7276718_7293257	1/1	c0002	1530	124	9	29	67	6	11	copy fasta	SLC2A4	chr17	7276718	7293257
SLC2A4_chr17_7276718_7293257	0/0	c0003	1530	4	3	1	0	0	0	copy fasta	SLC2A4	chr17	7276718	7293257
SLC2A4_chr17_7276718_7293257	0/0	c0004	1530	1	1	0	0	0	0	copy fasta	SLC2A4	chr17	7276718	7293257