JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ATP4B_chr13_113643804_113663198	0/0	c0012	876	1	1	0	0	0	0	copy fasta	ATP4B	chr13	113643804	113663198
ATP4B_chr13_113643804_113663198	0/0	c0013	876	1	0	0	1	0	0	copy fasta	ATP4B	chr13	113643804	113663198
ATP4B_chr13_113643804_113663198	0/0	c0014	876	1	0	1	0	0	0	copy fasta	ATP4B	chr13	113643804	113663198
ATP4B_chr13_113643804_113663198	0/0	c0015	876	1	0	0	0	0	1	copy fasta	ATP4B	chr13	113643804	113663198
ATP4B_chr13_113643804_113663198	0/0	c0016	876	1	1	0	0	0	0	copy fasta	ATP4B	chr13	113643804	113663198
ATP4B_chr13_113643804_113663198	0/0	c0017	876	1	0	0	1	0	0	copy fasta	ATP4B	chr13	113643804	113663198
ATP5F1A_chr18_46075248_46103296	1/1	c0001	1662	366	83	60	161	18	42	copy fasta	ATP5F1A	chr18	46075248	46103296
ATP5F1A_chr18_46075248_46103296	0/0	c0002	1662	10	1	2	7	0	0	copy fasta	ATP5F1A	chr18	46075248	46103296
ATP5F1A_chr18_46075248_46103296	0/0	c0003	1662	7	7	0	0	0	0	copy fasta	ATP5F1A	chr18	46075248	46103296
ATP5F1A_chr18_46075248_46103296	0/0	c0004	1662	3	0	0	3	0	0	copy fasta	ATP5F1A	chr18	46075248	46103296
ATP5F1A_chr18_46075248_46103296	0/0	c0005	1662	2	1	0	0	0	1	copy fasta	ATP5F1A	chr18	46075248	46103296
ATP5F1A_chr18_46075248_46103296	0/0	c0006	1662	1	0	0	1	0	0	copy fasta	ATP5F1A	chr18	46075248	46103296
ATP5F1A_chr18_46075248_46103296	0/0	c0007	1662	1	0	0	0	0	1	copy fasta	ATP5F1A	chr18	46075248	46103296
ATP5F1B_chr12_56633175_56650984	1/1	c0001	1590	363	92	68	154	16	31	copy fasta	ATP5F1B	chr12	56633175	56650984
ATP5F1B_chr12_56633175_56650984	0/0	c0002	1590	25	0	0	22	0	3	copy fasta	ATP5F1B	chr12	56633175	56650984
ATP5F1B_chr12_56633175_56650984	0/0	c0003	1590	2	0	0	2	0	0	copy fasta	ATP5F1B	chr12	56633175	56650984
ATP5F1C_chr10_7783177_7812801	1/1	c0001	897	416	80	74	200	16	44	copy fasta	ATP5F1C	chr10	7783177	7812801
ATP5F1C_chr10_7783177_7812801	0/0	c0002	897	3	3	0	0	0	0	copy fasta	ATP5F1C	chr10	7783177	7812801
ATP5F1C_chr10_7783177_7812801	0/0	c0003	897	1	1	0	0	0	0	copy fasta	ATP5F1C	chr10	7783177	7812801
ATP5F1D_chr19_1236751_1249825	1/1	c0001	507	403	95	80	167	16	43	copy fasta	ATP5F1D	chr19	1236751	1249825
ATP5F1D_chr19_1236751_1249825	0/0	c0002	507	4	0	0	4	0	0	copy fasta	ATP5F1D	chr19	1236751	1249825
ATP5F1D_chr19_1236751_1249825	0/0	c0003	507	2	2	0	0	0	0	copy fasta	ATP5F1D	chr19	1236751	1249825
ATP5F1D_chr19_1236751_1249825	0/0	c0004	507	1	1	0	0	0	0	copy fasta	ATP5F1D	chr19	1236751	1249825
ATP5F1D_chr19_1236751_1249825	0/0	c0005	507	1	0	0	1	0	0	copy fasta	ATP5F1D	chr19	1236751	1249825
ATP5F1D_chr19_1236751_1249825	0/0	c0006	507	1	0	0	0	0	1	copy fasta	ATP5F1D	chr19	1236751	1249825
ATP5F1E_chr20_59020475_59037335	1/1	c0001	156	401	89	78	170	16	46	copy fasta	ATP5F1E	chr20	59020475	59037335
ATP5F1E_chr20_59020475_59037335	0/0	c0002	156	1	1	0	0	0	0	copy fasta	ATP5F1E	chr20	59020475	59037335
ATP5F1E_chr20_59020475_59037335	0/0	c0003	156	1	0	0	0	0	1	copy fasta	ATP5F1E	chr20	59020475	59037335
ATP5F1E_chr20_59020475_59037335	0/0	c0004	156	1	0	0	0	0	1	copy fasta	ATP5F1E	chr20	59020475	59037335
ATP5IF1_chr1_28231124_28243100	1/1	c0001	321	359	90	78	139	12	38	copy fasta	ATP5IF1	chr1	28231124	28243100
ATP5IF1_chr1_28231124_28243100	0/0	c0002	321	1	0	0	1	0	0	copy fasta	ATP5IF1	chr1	28231124	28243100
ATP5MC1_chr17_48887787_48900871	1/1	c0001	411	334	90	60	134	12	36	copy fasta	ATP5MC1	chr17	48887787	48900871
ATP5MC2_chr12_53660170_53681083	1/1	c0001	426	410	94	80	178	12	44	copy fasta	ATP5MC2	chr12	53660170	53681083
ATP5MC2_chr12_53660170_53681083	0/0	c0002	426	7	3	0	4	0	0	copy fasta	ATP5MC2	chr12	53660170	53681083
ATP5MC2_chr12_53660170_53681083	0/0	c0003	426	1	1	0	0	0	0	copy fasta	ATP5MC2	chr12	53660170	53681083
ATP5MC3_chr2_175171258_175186710	1/1	c0001	429	374	83	65	172	16	36	copy fasta	ATP5MC3	chr2	175171258	175186710
ATP5MC3_chr2_175171258_175186710	0/0	c0002	429	8	0	5	0	0	3	copy fasta	ATP5MC3	chr2	175171258	175186710
ATP5MC3_chr2_175171258_175186710	0/0	c0003	429	4	0	0	0	0	4	copy fasta	ATP5MC3	chr2	175171258	175186710
ATP5MC3_chr2_175171258_175186710	0/0	c0004	429	2	0	0	2	0	0	copy fasta	ATP5MC3	chr2	175171258	175186710
ATP5MC3_chr2_175171258_175186710	0/0	c0005	429	1	1	0	0	0	0	copy fasta	ATP5MC3	chr2	175171258	175186710
ATP5MC3_chr2_175171258_175186710	0/0	c0006	429	1	0	0	0	0	1	copy fasta	ATP5MC3	chr2	175171258	175186710
ATP5ME_chr4_667436_679276	1/1	c0001	210	393	92	80	160	18	41	copy fasta	ATP5ME	chr4	667436	679276
ATP5ME_chr4_667436_679276	0/0	c0002	210	1	0	0	0	0	1	copy fasta	ATP5ME	chr4	667436	679276
ATP5MF_chr7_99453195_99471167	1/1	c0001	285	341	92	52	141	12	42	copy fasta	ATP5MF	chr7	99453195	99471167
ATP5MF_chr7_99453195_99471167	0/0	c0002	285	2	0	0	2	0	0	copy fasta	ATP5MF	chr7	99453195	99471167
ATP5MF_chr7_99453195_99471167	0/0	c0003	285	2	0	0	0	0	2	copy fasta	ATP5MF	chr7	99453195	99471167
ATP5MF_chr7_99453195_99471167	0/0	c0004	285	1	0	0	1	0	0	copy fasta	ATP5MF	chr7	99453195	99471167
ATP5MGL_chr22_42634803_42645601	1/1	c0001	303	242	58	64	70	10	38	copy fasta	ATP5MGL	chr22	42634803	42645601
ATP5MGL_chr22_42634803_42645601	0/0	c0002	303	125	28	8	78	0	11	copy fasta	ATP5MGL	chr22	42634803	42645601
ATP5MGL_chr22_42634803_42645601	0/0	c0003	303	5	5	0	0	0	0	copy fasta	ATP5MGL	chr22	42634803	42645601