JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SLC2A4_chr17_7276718_7293257	0/0	c0005	1530	1	0	1	0	0	0	copy fasta	SLC2A4	chr17	7276718	7293257
SLC2A4_chr17_7276718_7293257	0/0	c0006	1530	1	0	0	1	0	0	copy fasta	SLC2A4	chr17	7276718	7293257
SLC2A4_chr17_7276718_7293257	0/0	c0007	1530	1	1	0	0	0	0	copy fasta	SLC2A4	chr17	7276718	7293257
SLC2A4_chr17_7276718_7293257	0/0	c0008	1530	1	0	1	0	0	0	copy fasta	SLC2A4	chr17	7276718	7293257
SLC2A4_chr17_7276718_7293257	0/0	c0009	1530	1	1	0	0	0	0	copy fasta	SLC2A4	chr17	7276718	7293257
SLC2A5_chr1_9030106_9074635	1/1	c0001	1506	325	71	58	133	18	43	copy fasta	SLC2A5	chr1	9030106	9074635
SLC2A5_chr1_9030106_9074635	0/0	c0002	1506	2	0	0	1	0	1	copy fasta	SLC2A5	chr1	9030106	9074635
SLC2A5_chr1_9030106_9074635	0/0	c0003	1506	2	1	1	0	0	0	copy fasta	SLC2A5	chr1	9030106	9074635
SLC2A5_chr1_9030106_9074635	0/0	c0004	1506	2	0	0	2	0	0	copy fasta	SLC2A5	chr1	9030106	9074635
SLC2A5_chr1_9030106_9074635	0/0	c0005	1506	1	0	0	1	0	0	copy fasta	SLC2A5	chr1	9030106	9074635
SLC2A5_chr1_9030106_9074635	0/0	c0006	1506	1	0	0	1	0	0	copy fasta	SLC2A5	chr1	9030106	9074635
SLC2A5_chr1_9030106_9074635	0/0	c0007	1506	1	1	0	0	0	0	copy fasta	SLC2A5	chr1	9030106	9074635
SLC2A5_chr1_9030106_9074635	0/0	c0008	1506	1	0	1	0	0	0	copy fasta	SLC2A5	chr1	9030106	9074635
SLC2A5_chr1_9030106_9074635	0/0	c0009	1506	1	1	0	0	0	0	copy fasta	SLC2A5	chr1	9030106	9074635
SLC2A6_chr9_133466094_133484099	0/1	c0001	1524	242	40	40	128	11	22	copy fasta	SLC2A6	chr9	133466094	133484099
SLC2A6_chr9_133466094_133484099	1/0	c0002	1524	77	37	12	17	4	6	copy fasta	SLC2A6	chr9	133466094	133484099
SLC2A6_chr9_133466094_133484099	0/0	c0003	1524	44	0	18	16	0	10	copy fasta	SLC2A6	chr9	133466094	133484099
SLC2A6_chr9_133466094_133484099	0/0	c0004	1524	11	0	0	11	0	0	copy fasta	SLC2A6	chr9	133466094	133484099
SLC2A6_chr9_133466094_133484099	0/0	c0005	1524	10	8	2	0	0	0	copy fasta	SLC2A6	chr9	133466094	133484099
SLC2A6_chr9_133466094_133484099	0/0	c0006	1524	8	0	0	8	0	0	copy fasta	SLC2A6	chr9	133466094	133484099
SLC2A6_chr9_133466094_133484099	0/0	c0007	1524	8	2	2	0	1	3	copy fasta	SLC2A6	chr9	133466094	133484099
SLC2A6_chr9_133466094_133484099	0/0	c0008	1524	6	0	0	6	0	0	copy fasta	SLC2A6	chr9	133466094	133484099
SLC2A6_chr9_133466094_133484099	0/0	c0009	1524	6	0	2	1	2	1	copy fasta	SLC2A6	chr9	133466094	133484099
SLC2A6_chr9_133466094_133484099	0/0	c0010	1524	5	4	1	0	0	0	copy fasta	SLC2A6	chr9	133466094	133484099
SLC2A6_chr9_133466094_133484099	0/0	c0011	1524	5	0	0	5	0	0	copy fasta	SLC2A6	chr9	133466094	133484099
SLC2A6_chr9_133466094_133484099	0/0	c0012	1524	3	0	3	0	0	0	copy fasta	SLC2A6	chr9	133466094	133484099
SLC2A6_chr9_133466094_133484099	0/0	c0013	1524	2	0	0	0	0	2	copy fasta	SLC2A6	chr9	133466094	133484099
SLC2A6_chr9_133466094_133484099	0/0	c0014	1524	2	0	0	2	0	0	copy fasta	SLC2A6	chr9	133466094	133484099
SLC2A6_chr9_133466094_133484099	0/0	c0015	1524	1	0	0	1	0	0	copy fasta	SLC2A6	chr9	133466094	133484099
SLC2A6_chr9_133466094_133484099	0/0	c0016	1524	1	0	0	1	0	0	copy fasta	SLC2A6	chr9	133466094	133484099
SLC2A6_chr9_133466094_133484099	0/0	c0017	1524	1	1	0	0	0	0	copy fasta	SLC2A6	chr9	133466094	133484099
SLC2A6_chr9_133466094_133484099	0/0	c0018	1524	1	1	0	0	0	0	copy fasta	SLC2A6	chr9	133466094	133484099
SLC2A6_chr9_133466094_133484099	0/0	c0019	1524	1	1	0	0	0	0	copy fasta	SLC2A6	chr9	133466094	133484099
SLC2A6_chr9_133466094_133484099	0/0	c0020	1524	1	1	0	0	0	0	copy fasta	SLC2A6	chr9	133466094	133484099
SLC2A6_chr9_133466094_133484099	0/0	c0021	1524	1	1	0	0	0	0	copy fasta	SLC2A6	chr9	133466094	133484099
SLC2A6_chr9_133466094_133484099	0/0	c0022	1524	1	1	0	0	0	0	copy fasta	SLC2A6	chr9	133466094	133484099
SLC2A6_chr9_133466094_133484099	0/0	c0023	1524	1	1	0	0	0	0	copy fasta	SLC2A6	chr9	133466094	133484099
SLC2A7_chr1_8997973_9031423	1/1	c0001	1539	279	58	49	116	14	40	copy fasta	SLC2A7	chr1	8997973	9031423
SLC2A7_chr1_8997973_9031423	0/0	c0002	1539	56	1	16	31	2	6	copy fasta	SLC2A7	chr1	8997973	9031423
SLC2A7_chr1_8997973_9031423	0/0	c0003	1539	49	10	6	33	0	0	copy fasta	SLC2A7	chr1	8997973	9031423
SLC2A7_chr1_8997973_9031423	0/0	c0004	1539	19	3	1	14	0	1	copy fasta	SLC2A7	chr1	8997973	9031423
SLC2A7_chr1_8997973_9031423	0/0	c0005	1539	7	7	0	0	0	0	copy fasta	SLC2A7	chr1	8997973	9031423
SLC2A7_chr1_8997973_9031423	0/0	c0006	1539	5	4	1	0	0	0	copy fasta	SLC2A7	chr1	8997973	9031423
SLC2A7_chr1_8997973_9031423	0/0	c0007	1539	5	0	3	0	2	0	copy fasta	SLC2A7	chr1	8997973	9031423
SLC2A7_chr1_8997973_9031423	0/0	c0008	1539	4	0	0	4	0	0	copy fasta	SLC2A7	chr1	8997973	9031423
SLC2A7_chr1_8997973_9031423	0/0	c0009	1539	2	2	0	0	0	0	copy fasta	SLC2A7	chr1	8997973	9031423
SLC2A7_chr1_8997973_9031423	0/0	c0010	1539	1	1	0	0	0	0	copy fasta	SLC2A7	chr1	8997973	9031423
SLC2A7_chr1_8997973_9031423	0/0	c0011	1539	1	0	0	1	0	0	copy fasta	SLC2A7	chr1	8997973	9031423
SLC2A7_chr1_8997973_9031423	0/0	c0012	1539	1	0	0	1	0	0	copy fasta	SLC2A7	chr1	8997973	9031423
SLC2A7_chr1_8997973_9031423	0/0	c0013	1539	1	1	0	0	0	0	copy fasta	SLC2A7	chr1	8997973	9031423